Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq194959 576 4e-162 seq115184 562 8e-158 seq121170 150 5e-34 >seq194959 Length=11641 Score = 576 bits (638), Expect = 4e-162 Identities = 372/407 (91%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6930 TACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 6989 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 6990 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTGATGTAAGACAGATGT 7049 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||||||| |||||||||| |||||||||||||||| || ||||| | |||| Sbjct 7050 GAAATCCCCGGGCTCAACCTGGGAACTGCATTTGTGACTGCATCGCTGGAGTGCGGCAGA 7109 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 7110 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 7169 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 7170 CGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 7229 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| Sbjct 7230 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACT 7289 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || |||||| |||||||||||||||||||||||||||||| ||| Sbjct 7290 GACTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 7336 >seq115184 Length=93111 Score = 562 bits (622), Expect = 8e-158 Identities = 371/408 (91%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69996 TATCTGCAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 69937 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||||| | |||||||| | |||| || ||| Sbjct 69936 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGTGTAGGCGGTTCGGAAAGAAAGATGT 69877 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181 |||||||| ||||| ||||| |||| ||||||| | ||||| ||| ||||||| |||||| Sbjct 69876 GAAATCCCAGGGCTCAACCTTGGAACTGCATTTTTAACTGC-CGAGCTAGAGTATGTCAG 69818 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 69817 AGGGGGGTAGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAATACCGATG 69758 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 69757 GCGAAGGCAGCCCCCTGGGATAATACTGACGCTCAGACACGAAAGCGTGGGGAGCAAACA 69698 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 69697 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTAGCTGTTGGGGCCGTTA 69638 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| ||| || |||||||||||||||||||||||||||||| ||| Sbjct 69637 GGCCTTAGTAGCGCAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 69590 >seq121170 Length=1835 Score = 150 bits (166), Expect = 5e-34 Identities = 143/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290 |||||||| |||||||||| || | |||| | ||||||||| | ||||||||||||| Sbjct 1833 GAACACCAGTGGCGAAGGCGGCTCACTGGCCCGATACTGACGCTGAGGCACGAAAGCGTG 1774 Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT 350 |||||||||||||||||||||||||||||||||||||| |||||||| | || || Sbjct 1773 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGT 1714 Query 351 TGGGGA-TTTACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| | ||||||| | || || ||||||||| | ||| ||||||||||| ||| Sbjct 1713 TGGAAAGTTTACTT-TTCAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTAC 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1287084196736