Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq52333 170 3e-40 seq194959 131 2e-28 seq149210 131 2e-28 seq123339 131 2e-28 seq115184 131 2e-28 >seq52333 Length=5662 Score = 170 bits (188), Expect = 3e-40 Identities = 192/253 (76%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || ||||| | || ||| Sbjct 3279 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCTCTTAC-GAGTTTGCAGA 3337 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||||||||||||||| || || | | ||| ||| ||||| | Sbjct 3338 GTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCTGGTATTTGCAACCTTTTTCAGCTTTA 3397 Query 122 CACGT-----CGTTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 ||| | |||||| | | ||||| ||||||||||||||||||| | ||||||| Sbjct 3398 GTCGTAAAGACTTTCACCTATTAAAGGCACACCTTCTCCCGAAGTTACGGTGTCATTTTG 3457 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| ||||| | | |||||||||||||||||||| || | ||||||| Sbjct 3458 CCTAGTTCCTTCACCCAAGTTCTCTCAAACGCCTTAGTATTCTCTACTTGTCTACCTGTG 3517 Query 236 TCGGTTTACGGTA 248 |||||||| |||| Sbjct 3518 TCGGTTTA-GGTA 3529 >seq194959 Length=11641 Score = 131 bits (144), Expect = 2e-28 Identities = 181/249 (73%), Gaps = 11/249 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 10446 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 10388 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCAC------CACCAGCTCA 120 ||||||||| ||||||||||| || | ||| | ||| ||| | | || ||| Sbjct 10387 GTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCCCGTTGGGCTCC--CTCT 10330 Query 121 ACACGTCGTTCACCAGCA-GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 ||| ||||||| | | |||| ||||||||||||||||||| || |||||||| Sbjct 10329 GTACGA-GTTCACCTACTTGGGGCATACCTTCTCCCGAAGTTACGGTATCAATTTGCCGA 10271 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| || ||||| | | | |||||||| || ||| | | |||| ||||||| Sbjct 10270 GTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGG 10211 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 10210 TTTGCGGTA 10202 >seq149210 Length=2481 Score = 131 bits (144), Expect = 2e-28 Identities = 185/256 (72%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| |||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 2392 CTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAG 2334 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118 | ||||||||||||||||||||||| || | |||| ||||| || | | ||| Sbjct 2333 AGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCCTCTTCATGCTTT 2274 Query 119 -----CA-ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172 || ||| || ||| | | |||| ||||||||||||||||||| | | Sbjct 2273 GTGCGCAGGCACATC--ACACTA-ATGAGGCATACCTTCTCCCGAAGTTACGGTATTAAT 2217 Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232 ||||||| |||||| || ||||| | | | |||||| | || || || | |||||| Sbjct 2216 TTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAATATTCATCCCGTCCACCT 2157 Query 233 GTGTCGGTTTACGGTA 248 |||||||||| ||||| Sbjct 2156 GTGTCGGTTTGCGGTA 2141 >seq123339 Length=2740 Score = 131 bits (144), Expect = 2e-28 Identities = 185/256 (72%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| |||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 1161 CTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAG 1103 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118 | ||||||||||||||||||||||| || | |||| ||||| || | | ||| Sbjct 1102 AGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCCTCTTCATGCTTT 1043 Query 119 -----CA-ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172 || ||| || ||| | | |||| ||||||||||||||||||| | | Sbjct 1042 GTGCGCAGGCACATC--ACACTA-ATGAGGCATACCTTCTCCCGAAGTTACGGTATTAAT 986 Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232 ||||||| |||||| || ||||| | | | |||||| | || || || | |||||| Sbjct 985 TTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAATATTCATCCCGTCCACCT 926 Query 233 GTGTCGGTTTACGGTA 248 |||||||||| ||||| Sbjct 925 GTGTCGGTTTGCGGTA 910 >seq115184 Length=93111 Score = 131 bits (144), Expect = 2e-28 Identities = 185/256 (72%), Gaps = 12/256 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| |||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 66467 CTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAG 66525 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT-- 118 | ||||||||||||||||||||||| || | |||| ||||| || | | ||| Sbjct 66526 AGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCCTCTTCATGCTTT 66585 Query 119 -----CA-ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172 || ||| || ||| | | |||| ||||||||||||||||||| | | Sbjct 66586 GTGCGCAGGCACATC--ACACTA-ATGAGGCATACCTTCTCCCGAAGTTACGGTATTAAT 66642 Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232 ||||||| |||||| || ||||| | | | |||||| | || || || | |||||| Sbjct 66643 TTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAATATTCATCCCGTCCACCT 66702 Query 233 GTGTCGGTTTACGGTA 248 |||||||||| ||||| Sbjct 66703 GTGTCGGTTTGCGGTA 66718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693087669932