Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq52333 87.8 2e-15 seq149210 84.2 2e-14 seq123339 84.2 2e-14 seq115184 84.2 2e-14 seq194959 75.2 1e-11 >seq52333 Length=5662 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| |||| | || || ||||||||||| ||||| ||| ||| |||| Sbjct 3524 AAACCGACACAGGTAGACAAGTAGAGAATACTAAGGCGTTTGAGAGAACTTGGGTGAAGG 3465 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCT 127 ||||||||||| |||| | |||||||||||| || | || ||| Sbjct 3464 AACTAGGCAAAATGACACCGTAACTTCGGGAGAAGGTGTGCCT 3422 >seq149210 Length=2481 Score = 84.2 bits (92), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| || | |||| ||||||| | |||||||||||| ||| ||| || Sbjct 2144 CGCAAACCGACACAGGTGGACGGGATGAATATTCCAAGGCGCTTGAGAGAACTCA-GGAG 2202 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||| |||||| | | | |||||||||||| || Sbjct 2203 AAGGAACTCGGCAAATTAATACCGTAACTTCGGGAGAA 2240 >seq123339 Length=2740 Score = 84.2 bits (92), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| || | |||| ||||||| | |||||||||||| ||| ||| || Sbjct 913 CGCAAACCGACACAGGTGGACGGGATGAATATTCCAAGGCGCTTGAGAGAACTCA-GGAG 971 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||| |||||| | | | |||||||||||| || Sbjct 972 AAGGAACTCGGCAAATTAATACCGTAACTTCGGGAGAA 1009 >seq115184 Length=93111 Score = 84.2 bits (92), Expect = 2e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| || | |||| ||||||| | |||||||||||| ||| ||| || Sbjct 66715 CGCAAACCGACACAGGTGGACGGGATGAATATTCCAAGGCGCTTGAGAGAACTCA-GGAG 66657 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||| |||||| | | | |||||||||||| || Sbjct 66656 AAGGAACTCGGCAAATTAATACCGTAACTTCGGGAGAA 66619 >seq194959 Length=11641 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| ||||| || || | ||| ||| |||||||||||||| ||| ||| || Sbjct 10205 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA-GGAG 10263 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||| |||||| ||| | |||||||||||| || Sbjct 10264 AAGGAACTCGGCAAATTGATACCGTAACTTCGGGAGAA 10301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530196097736