Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq115184 441 2e-121 seq194959 408 1e-111 seq123339 394 2e-107 seq149210 336 5e-90 seq52333 327 3e-87 >seq115184 Length=93111 Score = 441 bits (488), Expect = 2e-121 Identities = 348/413 (84%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| | || |||| ||| ||||||||| || |||||||| Sbjct 66283 CGCGGGGAGATTGCATCATCACAACCATGTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 66342 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66343 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 66402 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 66403 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT-GC---- 66457 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66458 ----ACCCCATCACTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 66513 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || | || || || Sbjct 66514 TCGTGTTTGCAGAGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCC 66573 Query 301 GGCATGA-GCTTACGGAGCAAGTCCTTCACCCTCA-CCGGCGCACCTTCTCCCGAAGTTA 358 | | | |||| | ||| | | |||| || | ||| ||||||||||||||||| Sbjct 66574 -TCTTCATGCTTTGTGCGCAGGCACATCACACTAATGAGGCATACCTTCTCCCGAAGTTA 66632 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411 |||| |||||| ||||||||| || ||||||||||||||||||||| || Sbjct 66633 CGGTATTAATTTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAAT 66685 >seq194959 Length=11641 Score = 408 bits (452), Expect = 1e-111 Identities = 342/416 (82%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 10636 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 10577 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10576 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 10517 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 10516 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 10462 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 10461 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 10406 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || | | | | ||| Sbjct 10405 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACC 10346 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTC-ACCGGCGCACCTTCTCCCGAAGTTAC 359 || ||| | | | | |||||| | ||| |||||||||||||||||| Sbjct 10345 CCGTTGGGCTCCCTCTGTACG-AGTTCACCTACTTGGGGCATACCTTCTCCCGAAGTTAC 10287 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||| | |||||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 10286 GGTATCAATTTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTC 10231 >seq123339 Length=2740 Score = 394 bits (436), Expect = 2e-107 Identities = 300/350 (86%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 64 GCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 GCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 1223 Query 124 GGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCT 183 |||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1222 GGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT-GC------- 1171 Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1170 -ACCCCATCACTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 1112 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 |||||||||||||||||||||||| |||||||||||||| || | || || || | Sbjct 1111 TGTTTGCAGAGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCC-TC 1053 Query 304 ATGA-GCTTACGGAGCAAGTCCTTCACCCTCA-CCGGCGCACCTTCTCCCGAAGTTACGG 361 | | |||| | ||| | | |||| || | ||| |||||||||||||||||||| Sbjct 1052 TTCATGCTTTGTGCGCAGGCACATCACACTAATGAGGCATACCTTCTCCCGAAGTTACGG 993 Query 362 TGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411 | |||||| ||||||||| || ||||||||||||||||||||| || Sbjct 992 TATTAATTTGCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTGGAAT 943 Score = 143 bits (158), Expect = 7e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| | || |||| ||| ||||||||| || |||||||| Sbjct 1558 CGCGGGGAGATTGCATCATCACAACCATGTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 1499 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 1442 >seq149210 Length=2481 Score = 336 bits (372), Expect = 5e-90 Identities = 268/318 (84%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 96 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGG 155 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2481 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGG 2422 Query 156 GGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCA 215 |||||||||||||||||| || ||||||||| ||||||||||||||||||||| Sbjct 2421 GGCTTCGATCAAGAGCTT-------GC--ACCCCATCACTTAACCTTCCGGCACCGGGCA 2371 Query 216 GGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAG 275 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2370 GGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAGTAAACAG 2311 Query 276 TCGCAGCGGCCTGGTATCTTCGACCGGCATGA-GCTTACGGAGCAAGTCCTTCACCCTCA 334 ||||||| || | || || || | | | |||| | ||| | | |||| || | Sbjct 2310 TCGCAGCCACCGATTCACTGCGGCC-TCTTCATGCTTTGTGCGCAGGCACATCACACTAA 2252 Query 335 -CCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTC 393 ||| ||||||||||||||||||||| |||||| ||||||||| || |||||| Sbjct 2251 TGAGGCATACCTTCTCCCGAAGTTACGGTATTAATTTGCCGAGTTCCTTCTCCTGAGTTC 2192 Query 394 TCTCAAGCGCCTTGGTAT 411 ||||||||||||||| || Sbjct 2191 TCTCAAGCGCCTTGGAAT 2174 >seq52333 Length=5662 Score = 327 bits (362), Expect = 3e-87 Identities = 259/307 (84%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 116 CTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT-- 173 |||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| Sbjct 3198 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATCTGAAGCTTTA 3257 Query 174 CGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACG 233 | | || |||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3258 CTCAAAAGTTAACTCCATCATTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACG 3317 Query 234 TCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATC 293 ||| ||| || ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 3318 TCCTCTTACGAGTTTGCAGAGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCTGGTATT 3377 Query 294 TTCGACCGGCATGAGCTTACGGAG-CAAGTCCTTCACC-CTCACCGGCGCACCTTCTCCC 351 | | ||| | ||||| | | ||| | |||||| | | ||| ||||||||||| Sbjct 3378 TGCAACCTTTTTCAGCTTTAGTCGTAAAGACTTTCACCTATTAAAGGCACACCTTCTCCC 3437 Query 352 GAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTAT 411 |||||||||||| | ||||||||||||||||| ||| ||||||||||| |||||| |||| Sbjct 3438 GAAGTTACGGTGTCATTTTGCCTAGTTCCTTCACCCAAGTTCTCTCAAACGCCTTAGTAT 3497 Query 412 TCTCTAC 418 ||||||| Sbjct 3498 TCTCTAC 3504 Score = 185 bits (204), Expect = 2e-44 Identities = 111/117 (95%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 2392 CGCGGGTACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGCCTTGGGTGGAGACAGC 2451 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2452 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1258340380928