Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq115184 224 2e-56 seq123339 217 3e-54 seq194959 215 1e-53 seq149210 174 3e-41 seq52333 147 5e-33 >seq115184 Length=93111 Score = 224 bits (248), Expect = 2e-56 Identities = 280/384 (73%), Gaps = 35/384 (9%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| || ||| ||| | |||||| | ||||||||| |||||| Sbjct 66295 GCATCATCACAACCATGTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTT 66354 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66355 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 66414 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||| ||||||| | ||| | |||| | | || | Sbjct 66415 TAGTTACGGCCGCCGTTTACCGGGGCTT-CGATCA----AGAGCTTGC---ACCCCAT-C 66465 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 ||||||||||| ||||||||||||||||| ||||||| || ||| || || |||| Sbjct 66466 ACTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 66525 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCAT----- 300 | |||||||||| |||||||||||| || |||| ||||||||| |||| Sbjct 66526 AGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCCTCTTCATGCTTT 66585 Query 301 ------AGAC--------------AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTG 340 || | ||||| ||||||||| ||||||||| | | |||| Sbjct 66586 GTGCGCAGGCACATCACACTAATGAGGCATACCTTCTCCCGAAGTTACGGTATTAATTTG 66645 Query 341 CCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| | ||||||| Sbjct 66646 CCGAGTTCCTTCTCCTGAGTTCTC 66669 >seq123339 Length=2740 Score = 217 bits (240), Expect = 3e-54 Identities = 246/330 (75%), Gaps = 35/330 (11%) Strand=Plus/Minus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1279 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1220 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | ||| | |||| | | Sbjct 1219 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTT-CGATCA----AGAGCTTGC---ACC 1168 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 || | ||||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 1167 CCAT-CACTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 1109 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCA 299 | ||||| |||||||||| |||||||||||| || |||| ||||||||| ||| Sbjct 1108 TTGCAGAGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCGATTCACTGCGGCCTCTTCA 1049 Query 300 T-----------AGAC--------------AGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 | || | ||||| ||||||||| ||||||||| | Sbjct 1048 TGCTTTGTGCGCAGGCACATCACACTAATGAGGCATACCTTCTCCCGAAGTTACGGTATT 989 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 | ||||||||||||||| | ||||||| Sbjct 988 AATTTGCCGAGTTCCTTCTCCTGAGTTCTC 959 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| || ||| ||| | |||||| | ||||||||| |||||| Sbjct 1546 GCATCATCACAACCATGTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTT 1487 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111 ||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1486 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 1442 >seq194959 Length=11641 Score = 215 bits (238), Expect = 1e-53 Identities = 209/267 (78%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | ||||||||| |||||| Sbjct 10624 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTT 10565 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10564 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 10505 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 10504 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 10454 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 10453 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 10394 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 10393 AGTGCTGTGTTTTTATTAAACAGTCGC 10367 >seq149210 Length=2481 Score = 174 bits (192), Expect = 3e-41 Identities = 219/301 (73%), Gaps = 35/301 (12%) Strand=Plus/Minus Query 90 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGG 149 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2481 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGG 2422 Query 150 GGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCA 209 ||||| | ||| | |||| | | || | ||||||||||| |||||||||| Sbjct 2421 GGCTT-CGATCA----AGAGCTTGC---ACCCCAT-CACTTAACCTTCCGGCACCGGGCA 2371 Query 210 GGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAG 269 ||||||| ||||||| || ||| || || ||||| |||||||||| |||||||| Sbjct 2370 GGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAGTAAACAG 2311 Query 270 TCGCTTGGGCCTATTCTCTGCGGCCT-GTCAT-----------AGAC------------- 304 |||| || |||| ||||||||| |||| || | Sbjct 2310 TCGCAGCCACCGATTCACTGCGGCCTCTTCATGCTTTGTGCGCAGGCACATCACACTAAT 2251 Query 305 -AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCT 363 ||||| ||||||||| ||||||||| | | ||||||||||||||| | |||||| Sbjct 2250 GAGGCATACCTTCTCCCGAAGTTACGGTATTAATTTGCCGAGTTCCTTCTCCTGAGTTCT 2191 Query 364 C 364 | Sbjct 2190 C 2190 >seq52333 Length=5662 Score = 147 bits (162), Expect = 5e-33 Identities = 205/289 (71%), Gaps = 39/289 (13%) Strand=Plus/Plus Query 110 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG 169 ||||||||||||||||||||||||||||||||||||| ||||||| | | |||| Sbjct 3198 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATCTGAAGCTT-- 3255 Query 170 ATTGCTCTAACAGAT--CCCC-----TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222 | ||| || || | | || |||||||||| ||||||||||||||||| ||| Sbjct 3256 --TACTCAAA-AGTTAACTCCATCATTTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 3312 Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282 |||| || |||| ||| || ||||| |||||||||| |||||||||||| ||| Sbjct 3313 ATACGTCCTCTTACGAGTTTGCAGAGTGCTGTGTTTTTAGTAAACAGTCGCAGCCACCTG 3372 Query 283 TTCTCTGCGGCCT------------GTC--ATAGAC-------------AGGCACCCCTT 315 | | ||| ||| ||| | |||| |||||| |||| Sbjct 3373 GTATTTGCAACCTTTTTCAGCTTTAGTCGTAAAGACTTTCACCTATTAAAGGCACACCTT 3432 Query 316 CTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||| ||||||||| ||||||||||| |||||||| || ||||||| Sbjct 3433 CTCCCGAAGTTACGGTGTCATTTTGCCTAGTTCCTTCACCCAAGTTCTC 3481 Score = 118 bits (130), Expect = 2e-24 Identities = 95/113 (84%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | |||| ||||||||| ||| || || ||||||| || || Sbjct 2398 TACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGCCTTGGGTGGAGACAGCGTGGCC 2457 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111 | |||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 2458 A--TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060327427584