Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq122191 509 5e-142 seq121170 495 1e-137 seq194959 473 4e-131 seq115184 416 9e-114 seq121653 75.2 3e-11 >seq122191 Length=2357 Score = 509 bits (564), Expect = 5e-142 Identities = 413/496 (83%), Gaps = 3/496 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| || |||||||||||||||||| Sbjct 2326 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 2267 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCT- 119 ||||||||||||||||||||||| |||||||||||| ||||||| | ||| || Sbjct 2266 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCGTTTGACATGGTAGGACGGCTT 2207 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 | |||||| || | |||||||||| || | ||||||| ||||||| |||||||| Sbjct 2206 CCAGAGATGGATTCCTTCCCTTCGGGG-ACCTACACACAGGTGCTGCATGGCTGTCGTCA 2148 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2147 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCTTTAGTTA 2088 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 |||||||| ||||||| ||||||| || |||||||| || ||||||||||||||||| Sbjct 2087 CCATCATTTAGTTGGGGACTCTAAAGGAACCGCCGGTGATAAGCCGGAGGAAGGTGGGGA 2028 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| |||||||| |||||| || ||||||||||||||||||||||| | || Sbjct 2027 TGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGACTA 1968 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || ||||||| | |||||||| ||| |||| | ||||| | |||||||||||||| Sbjct 1967 CAGTGGGCAGCAATCCCGCGAGGGGGAGCTAATCTCCAAAAGTCG-TCTCAGTTCGGATT 1909 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 || |||||||||||| |||||| ||||||||||||||||| ||||||||||| Sbjct 1908 GTTCTCTGCAACTCGAGAGCATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCG 1849 Query 480 CGGTGAATACGTTCCC 495 |||||||||||||||| Sbjct 1848 CGGTGAATACGTTCCC 1833 >seq121170 Length=1835 Score = 495 bits (548), Expect = 1e-137 Identities = 414/499 (83%), Gaps = 6/499 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1657 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1598 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC-CTCTGACCCCT 119 |||||||||||||| |||||||| |||||||||||| |||||||| || ||||| | Sbjct 1597 GTGGTTTAATTCGACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCTATGACCGGT 1538 Query 120 -CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | |||||| || ||||| ||||||| | |||| ||||||| ||||||| ||||||| Sbjct 1537 ACCAGAGATGGAACCTTCCC-TTCGGGGCATAGAGC-ACAGGTGCTGCATGGCTGTCGTC 1480 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1479 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTT 1420 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGG 297 || | |||| ||||| |||||||||| |||||||||||| || ||| |||||||||||| Sbjct 1419 GCTACCATTTAGTTGAGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGG 1360 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| |||||| | |||||||||||||||||||||||| Sbjct 1359 GATGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGT 1300 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 ||| ||| || || || | ||||||| || |||| | |||||||||||| Sbjct 1299 GACAGTGGGACGCTAAGGGGCAACCCTTCGCAAATCTCAAAAAGCCG-TCTCAGTTCGGA 1241 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 ||| |||||||||||| |||||| ||||||||||||||||||| ||||||||||| Sbjct 1240 TTGGGCTCTGCAACTCGAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGC 1181 Query 478 TACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 1180 CACGGTGAATACGTTCCCG 1162 >seq194959 Length=11641 Score = 473 bits (524), Expect = 4e-131 Identities = 407/499 (82%), Gaps = 11/499 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 7334 TACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 7393 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||| ||||||||| | ||||||| | || ||| Sbjct 7394 GTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACATGTACGGAATCCTT 7453 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGA-GTGACA--GGTGATGCATGGTTGTCGT 177 |||||||||||| | | ||| || || || ||| |||| ||||||| |||||| Sbjct 7454 TAGAGATAGAGGAGTGC---TCGAAAGAGAGCCGTAACACAGGTGCTGCATGGCTGTCGT 7510 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 7511 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGCCATTAGT 7570 Query 238 TGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| | | ||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 7571 TGCTACGA--AAG---GGCACTCTAATGGGACTGCCGGTGACAAACCGGAGGAAGGTGGG 7625 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| ||||||| | ||||||||||||| |||||||| Sbjct 7626 GATGACGTCAAGTCCTCATGGCCCTTATAGGTGGGGCTACACACGTCATACAATGGCTGG 7685 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| |||| || || |||||||| ||| ||||||| |||| || ||| |||| Sbjct 7686 TACAGAGGGTTGCCAACCCGCGAGGGGGAGCCAATCCCACAAAGCCAGTCGTAGTCCGGA 7745 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 | | |||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct 7746 TCGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGCGGATCAGAATGT 7805 Query 478 TACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 7806 CGCGGTGAATACGTTCCCG 7824 >seq115184 Length=93111 Score = 416 bits (460), Expect = 9e-114 Identities = 393/497 (79%), Gaps = 7/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 69592 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 69533 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 |||| ||||||||| |||||||||| ||||||||| | |||||||| |||| | | Sbjct 69532 GTGGATTAATTCGATGCAACGCGAAAAACCTTACCTACCCTTGACATG-TCTGGAAAGCC 69474 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 |||||| | | | | | | || | ||||||| ||||||| |||||||| Sbjct 69473 GAAGAGATTTGGCCGTGCTCGCAAGAGAACCGGAACACAGGTGCTGCATGGCTGTCGTCA 69414 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 69413 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTG 69354 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 | | ||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 69353 CTACGC--AAGA---GCACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 69299 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| || ||||| |||||||| | ||||| ||||||| |||||||| | | Sbjct 69298 TGACGTCAAGTCCTCATGGCCCTTATGGGTAGGGCTTCACACGTCATACAATGGTCGGGA 69239 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || |||| || || |||||||| ||| |||| || ||| | || ||| ||||| Sbjct 69238 CAGAGGGTCGCCAACCCGCGAGGGGGAGCCAATCTCAGAAACCCGATCGTAGTCCGGATC 69179 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | |||||||||||||||| ||||| ||||||||||||||||| |||||| ||| Sbjct 69178 GCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGCGGATCAGAATGTCG 69119 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 69118 CGGTGAATACGTTCCCG 69102 >seq121653 Length=1795 Score = 75.2 bits (82), Expect = 3e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 440 ATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 |||||| ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1 ATGAAGGCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1501065936640