Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq52333 183 6e-44 seq194959 170 4e-40 seq123339 170 4e-40 seq115184 170 4e-40 >seq52333 Length=5662 Score = 183 bits (202), Expect = 6e-44 Identities = 232/313 (74%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGT-TGTATTGGATTTCTAAC 88 |||| ||| || |||||| | ||| |||| |||| || ||| || | ||||||| Sbjct 2299 ACGCTAGTTTTAGTGGAGCCATTCTTGAAATACCACCCTAGTGTGT-TTAAAGTTCTAAC 2241 Query 89 CGGACGACGTATAACCG--TTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT 146 | | ||| || ||| ||| | |||||||| | || ||||||||||||||||| Sbjct 2240 CTTAACTCGT-TATCCGGGTTG--GAGACAGTGTATGGTAGGTAGTTTGACTGGGGCGGT 2184 Query 147 CGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGC 206 | ||||| ||| ||||||||||| | ||||| || ||||||| || ||||| | ||| Sbjct 2183 CTCCTCCAAAAAAGTAACGGAGGAGTACAAAGGTATCCTCAGCACGGTCGGAAATCGTGC 2124 Query 207 GCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 ||||||||||| ||||||| || |||| || || |||||| | |||| ||||| Sbjct 2123 ATTGTGTGCAAAGGCATAAGGGTGCTTAACTGTGAGACTGACAAGTCAAACAGGTACGAA 2064 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 ||| || |||| |||||||| || || |||||| ||| |||||| ||||||||||| Sbjct 2063 AGTAGGTCTTAGTGATCCGGTAGTCCTTTATGGAAGGGCTATCGCTCAACGGATAAAAGG 2004 Query 327 TACCCTGGGGATA 339 ||| | ||||||| Sbjct 2003 TACTCCGGGGATA 1991 >seq194959 Length=11641 Score = 170 bits (188), Expect = 4e-40 Identities = 229/312 (73%), Gaps = 5/312 (2%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||| ||| ||| |||||| |||| |||| |||| || ||| || || ||||||| Sbjct 10730 ACGCTAGTTCTCATGGAGCCAACGTTGAAATACCACCC-TGGTGTGTTTGAGGTTCTAAC 10788 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | | | | || | | ||||||||| | ||||||||||||||||||||| Sbjct 10789 CT-AGGTCCATTATCTGGATCGGGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCT 10847 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCG 207 |||||||||| |||||||||| | | ||| ||| || || | | | ||| | | || Sbjct 10848 CCTCCCAAAGCGTAACGGAGGAGTTCGAAGGTACGCT-AGTTACGGTCGGACATCGTGAC 10906 Query 208 CACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAA 267 | ||||||| |||| ||| ||| || ||||||| || |||||| ||||| ||||| Sbjct 10907 GATAGTGCAATGGCATAAGCGTGCTTAACTGCGAGACTGACAAGTCGAGCAGATGCGAAA 10966 Query 268 GTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 | || | || |||||||| ||| ||| |||||| |||| |||||| ||||||||||| | Sbjct 10967 GCAGGACATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGT 11026 Query 328 ACCCTGGGGATA 339 || ||||||||| Sbjct 11027 ACTCTGGGGATA 11038 >seq123339 Length=2740 Score = 170 bits (188), Expect = 4e-40 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 |||||||||||||||||||||| ||||| |||| |||||||||| | | ||| ||| || Sbjct 1747 GGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGAGTTCGAAGGTACGCT 1806 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 || ||||| | | | ||||||| |||| ||| ||| ||||||| || || Sbjct 1807 AGAGACGGTCGGAAATCGTCTTGATAGTGCAATGGCATAAGCGTGCTTGACTGTGAGACT 1866 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||| |||||||| || | || |||||||| ||| ||| |||||| ||| Sbjct 1867 GACAAGTCGAACAGGTACGAAAGTAGGACATAGTGATCCGGTGGTTCTGTATGGAAGGGC 1926 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||||||||| ||| ||||||||| Sbjct 1927 CATCGCTCAACGGATAAAAGGTACTCTGGGGATA 1960 >seq115184 Length=93111 Score = 170 bits (188), Expect = 4e-40 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 |||||||||||||||||||||| ||||| |||| |||||||||| | | ||| ||| || Sbjct 66094 GGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGAGTTCGAAGGTACGCT 66035 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 || ||||| | | | ||||||| |||| ||| ||| ||||||| || || Sbjct 66034 AGAGACGGTCGGAAATCGTCTTGATAGTGCAATGGCATAAGCGTGCTTGACTGTGAGACT 65975 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||| |||||||| || | || |||||||| ||| ||| |||||| ||| Sbjct 65974 GACAAGTCGAACAGGTACGAAAGTAGGACATAGTGATCCGGTGGTTCTGTATGGAAGGGC 65915 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||||||||| ||| ||||||||| Sbjct 65914 CATCGCTCAACGGATAAAAGGTACTCTGGGGATA 65881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980483494784