Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq194959 118 1e-24 seq52333 116 4e-24 seq115184 109 6e-22 seq123339 105 7e-21 >seq194959 Length=11641 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | | | ||| ||| |||| Sbjct 10654 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 10595 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 10594 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 10536 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 10535 GACAAGGAATTTCGCTACCTTAGGACCGTTA 10505 >seq52333 Length=5662 Score = 116 bits (128), Expect = 4e-24 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | ||||||||||| Sbjct 2373 CGGGGTCTTTCCGTCTAGCCGCGGGTACGCTGCATCTTCACAGCGATTTCAATTTCACTG 2432 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 2433 AGCCTTGGGTGGAGACAGCGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2492 Query 143 GACAAGGAATTTCGCT 158 |||||||||||||||| Sbjct 2493 GACAAGGAATTTCGCT 2508 >seq115184 Length=93111 Score = 109 bits (120), Expect = 6e-22 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | ||| ||| |||| Sbjct 66265 GGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAACCATGTCAACTTCGCTGA 66324 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 66325 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 66383 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 66384 GACAAGGAATTTCGCTACCTTAGGACCGTTA 66414 >seq123339 Length=2740 Score = 105 bits (116), Expect = 7e-21 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1274 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 1215 Query 173 A 173 | Sbjct 1214 A 1214 Score = 82.4 bits (90), Expect = 8e-14 Identities = 99/136 (73%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | ||| ||| |||| Sbjct 1576 GGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAACCATGTCAACTTCGCTGA 1517 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 1516 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1458 Query 143 GACAAGGAATTTCGCT 158 |||||||||||||||| Sbjct 1457 GACAAGGAATTTCGCT 1442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546165859716