Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq127244 379 4e-103 seq115184 336 5e-90 seq194959 313 5e-83 >seq127244 Length=4668 Score = 379 bits (420), Expect = 4e-103 Identities = 290/338 (86%), Gaps = 5/338 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||||| |||||||||| |||| ||| Sbjct 25 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTTCCCCC 82 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 83 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 142 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| |||||| |||||||||||||| ||||||| || |||||||| || |||||| | Sbjct 143 TGTGGCTGATCGTCCTCTCAGACCAGCTACGGATTGTTGCCTTGGTAGGCTATTACCCTA 202 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||| |||||||||| ||||| | ||| |||||| ||||| |||| Sbjct 203 CCAACTAGCTAATCCGACGCAGGCTCATCTTATAGCACGAGGTCCGAAGATCCCCCGCTT 262 Query 241 T-CTCCCGTAGGACG--TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTAC 297 | || || | | |||||||||||||| | |||||| | |||||||||||||| Sbjct 263 TGCTTTTAAAGAAAGATTATGCGGTATTAGCCTGAGTTTCCCCAGGTTATCCCCCACTAT 322 Query 298 CAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| ||||||||| | |||||||||||||||||| || Sbjct 323 AAGGTAGATTCCTACGTATTACTCACCCGTCCGCCACT 360 >seq115184 Length=93111 Score = 336 bits (372), Expect = 5e-90 Identities = 295/362 (81%), Gaps = 8/362 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||| | || |||||||| || |||||||||||| |||| ||| Sbjct 70049 CTTTACAACCCGAAGGCCTTCAT-CATACACGCGGGAT-GGCTGGATCAGGGTTTCCCCC 70106 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 70107 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 70166 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||| ||||| |||||||||| ||||||||||||| ||||| || Sbjct 70167 TGTGGCTGGTCGTCCTCTCAAACCAGCTACGGATCGTTGCCTTGGTGAGCCTTTACCCCA 70226 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||||| | ||| || |||| | ||| | | ||||| ||| Sbjct 70227 CCAACTAGCTAATCCGATATCGGCCGCTCCAATAGTGAGAGGTCTTGCGATCCCCCCCTT 70286 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| |||||||||||||||| | |||| |||||||||| |||| | Sbjct 70287 TCCCCCGTAGGGCGTATGCGGTATTAGCCACTCTTTCGAGTAGTTATCCCCCGCTACTGG 70346 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC----TCAAGAGAAGCAAGCTTCTC 356 ||| |||| | |||||||||||||||||| ||| |||||| ||||||| |||| Sbjct 70347 GCACGTTCCGATATATTACTCACCCGTCCGCCACTCGCCGCCAAGAG-AGCAAGC-TCTC 70404 Query 357 TC 358 || Sbjct 70405 TC 70406 >seq194959 Length=11641 Score = 313 bits (346), Expect = 5e-83 Identities = 272/335 (81%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||| | | |||||||||| ||||||||||||||| |||||| Sbjct 6876 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCAT-GGCTGGATCAGGCTTGCGCCCA 6819 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 6818 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 6759 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| |||||||| |||||| ||| ||| | ||| Sbjct 6758 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTAAGCTTTTATCCCAC 6699 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||| |||||| | | | ||| || | ||||||||||| ||||||||||||| Sbjct 6698 CAACTACCTAATCTGCCATCGGCCGCTCCGTGAGCGCAAGGCCTTGCGGTCCCCTGCTTT 6639 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | || || |||||||||||||||| |||| |||||||||||||| | || Sbjct 6638 CATCCTGAGATCGTATGCGGTATTAGCAAAGCTTTCGCTTCGTTATCCCCCACTCTCGGG 6579 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | | ||||||||||||| |||| ||| Sbjct 6578 CACGTTCCGATGTATTACTCACCCGTTCGCCACTC 6544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069908699520