Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq127244 228 2e-57 seq194959 203 6e-50 seq115184 183 6e-44 >seq127244 Length=4668 Score = 228 bits (252), Expect = 2e-57 Identities = 240/315 (76%), Gaps = 22/315 (7%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 57 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 116 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 117 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACGGAT 176 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || | |||||| |||||||| | |||||||| |||||| | ||| || |||||| | Sbjct 177 TGTTGCCTTGGTAGGCTATTACCCTACCAACTAGCTAATCCGACGCAGGCTCATCTTATA 236 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTG-----------ACATTATGCGG 229 || | |||| ||| ||| || || || | ||||||||| Sbjct 237 GCACGA-------GGTC--CGAA-GATCCCCCGCTTTGCTTTTAAAGAAAGATTATGCGG 286 Query 230 TATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACT 289 ||||||| | |||||| | ||||| || | || |||| || || || |||| ||||| Sbjct 287 TATTAGCCTGAGTTTCCCCAGGTTATCCCCCACTATAAGGTAGATTCCT-ACGTATTACT 345 Query 290 CACCCGTCCGCCACT 304 ||||||||||||||| Sbjct 346 CACCCGTCCGCCACT 360 >seq194959 Length=11641 Score = 203 bits (224), Expect = 6e-50 Identities = 230/305 (75%), Gaps = 5/305 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| ||| || ||||||||||||||||||||| Sbjct 6845 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 6786 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 6785 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACAGAT 6726 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 |||||||||||| ||| ||||| |||||||||||||||| ||| ||| || | | Sbjct 6725 CGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATCGGCCGCTCCGTGA 6666 Query 181 GCGATAAATCTT-TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 ||| | ||| |||| || | |||||| || |||||||||||||| Sbjct 6665 GCGCAAGGCCTTGCGGTC---CCCTGCTTTCATCCTGAGATCGTATGCGGTATTAGCAAA 6609 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||| |||||| || | || |||| ||| | | || |||||||||||| || Sbjct 6608 GCTTTCGCTTCGTTATCCCCCACTCTCGGGCACGTT-CCGATGTATTACTCACCCGTTCG 6550 Query 300 CCACT 304 ||||| Sbjct 6549 CCACT 6545 >seq115184 Length=93111 Score = 183 bits (202), Expect = 6e-44 Identities = 133/154 (86%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||| Sbjct 70087 GCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 70146 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | || ||||||| || ||||| |||||| | Sbjct 70147 GGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAAACCAGCTACGGATCGTTGC 70206 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||||| || ||| | ||||||||| |||||| Sbjct 70207 CTTGGTGAGCCTTTACCCCACCAACTAGCTAATC 70240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 996452281344