Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq195024 141 2e-31 seq121770 123 6e-26 >seq195024 Length=163274 Score = 141 bits (156), Expect = 2e-31 Identities = 166/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 175 CCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGT 234 |||||||||||||||| ||| | || |||||| ||||||||| ||||| ||||||| Sbjct 110887 CCTTGCGGCAGATCTTGCTGATTTCACGTTCCAGGGAACGCACACCCGCTTCACGGGTGT 110946 Query 235 AGTAGCGGACGATGTCGCGGATCGTGCCGACTTC---AAATTCGATCTCGCCCTTCTTCA 291 |||| || ||||||||||| | | | |||| | ||| | |||||| | || Sbjct 110947 AGTAACGCACGATGTCGCG---CACGGCATCTTCGGTCACTTCCAGCTCGCCATCGCGCA 111003 Query 292 GGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGT 351 ||| ||| | ||| |||||||| |||||| | || || || | |||||| | Sbjct 111004 CGCCGTTGTTCTTCATCAGCTTGGGCAAGAGGTAATCGAAAGCAATACGCACCTTCTCAT 111063 Query 352 CTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 111064 CTTCGGTGTAACCCGACAGACGAATCACTTCCATACGGTCCAG 111106 Score = 75.2 bits (82), Expect = 3e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||||||| |||||||||| |||||| ||||| || || ||| | || || | Sbjct 110671 CGATGGTCAGCAACTCACCGCCCACCTCGGTCCAGGCCAGACCCGTCACCAGGCCAACCT 110730 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAG 86 | || | |||||||||||| || Sbjct 110731 TGTTCTCTTTTTCGGCCAGGCCGAAG 110756 >seq121770 Length=17352 Score = 123 bits (136), Expect = 6e-26 Identities = 268/396 (68%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||| |||||||| ||||||||||||| |||||| || || || |||||| |||| | Sbjct 12908 CGATCGTCAGCAATTCGCCGCCCACCTCGGTCCAGGCGAGACCGGTGACCGCGCCGATCT 12967 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 ||| || |||||||| |||||||| || |||||| |||||||| ||| | | || Sbjct 12968 GATTCTCCTGCTCGGACAGGCCGTGGCGGAATTTCTGCACGCCGGCGAACTCGTGGAGAT 13027 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGC-GCATGTTCCTTGACCGCCTTG 179 || | ||||| | | ||||| | || || | | ||| | | ||||||| Sbjct 13028 TTTCCGGCGTGATCGTTACCGATTCGGCCTTGCCCTCCAGGATGCGGC-GCAGCGCCTTG 13086 Query 180 CGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAG 239 || || ||| ||||||| ||||||||| ||||| || || |||||||||||| Sbjct 13087 CGCGCGAGCTTGGCGATCTCGCGCTCCAGCGTGCGCACGCCCGCCTCGCGGGTGTAGCGC 13146 Query 240 CGGACGATGTCGCGGATCGTGCCG-ACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATT 298 ||| | |||| | | || ||| | || ||||| | ||||||||||| Sbjct 13147 TGGATCAGCGCGCGCAGCCCCTCGTTGGTCAGCGT-GAATTCGCCGTCCTTCAGGCCATG 13205 Query 299 GGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGT 358 ||| ||||||||| |||| | |||||| | || ||||||||| ||||| Sbjct 13206 CGCCTCGATCTGCTTGTCGATCAGGTGCCGCTCGGCGATCTCGACCTTCTCGTCCTCGGT 13265 Query 359 GTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 || || ||||| || | ||||| || || || Sbjct 13266 ATAGCCTTCGAGGCGGATGATCTCCATGCGATCGAG 13301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156140146944