Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq149210 201 3e-49 seq123339 201 3e-49 seq115184 201 3e-49 seq194959 161 2e-37 seq52333 158 3e-36 >seq149210 Length=2481 Score = 201 bits (222), Expect = 3e-49 Identities = 292/405 (72%), Gaps = 17/405 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| | || || ||| | | | | Sbjct 1917 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 1858 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCA 122 ||| ||||||| ||||| ||| || ||||| | ||||||||||| | ||| Sbjct 1857 GAAACCTTGGACTTACGGCGAGGGGGCTTTTCACCCCCTTTATCGCTACTCATGTCAGCA 1798 Query 123 TTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGACG 181 |||||||| | | ||||| || | |||| || |||||| || || ||| Sbjct 1797 TTCTCACTTCCGATACCTCCAGCATTCC-TCACGGAACACCTTCACAGGCTTACGGAACG 1739 Query 182 CTCCCCTACC-------CA-ACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||| |||||| || | ||||| || ||||||||| || |||| ||| Sbjct 1738 CTCTCCTACCATGTGTACATAGTACACAT----CCGCAGCTTCGGTCTATGGCTTA-GCC 1684 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| ||||| Sbjct 1683 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGA 1624 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| |||||| || |||| || ||||||||| || Sbjct 1623 TGGCTGCTTCTAAGCCAACCTCCTGACTGTCTATGCCTTCCCACTTCGTTTCCCACTTAG 1564 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || | |||||| ||||||||| | |||||| ||||||||||| Sbjct 1563 CCA-TAGTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1520 >seq123339 Length=2740 Score = 201 bits (222), Expect = 3e-49 Identities = 292/405 (72%), Gaps = 17/405 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| | || || ||| | | | | Sbjct 686 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 627 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCA 122 ||| ||||||| ||||| ||| || ||||| | ||||||||||| | ||| Sbjct 626 GAAACCTTGGACTTACGGCGAGGGGGCTTTTCACCCCCTTTATCGCTACTCATGTCAGCA 567 Query 123 TTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGACG 181 |||||||| | | ||||| || | |||| || |||||| || || ||| Sbjct 566 TTCTCACTTCCGATACCTCCAGCATTCC-TCACGGAACACCTTCACAGGCTTACGGAACG 508 Query 182 CTCCCCTACC-------CA-ACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||| |||||| || | ||||| || ||||||||| || |||| ||| Sbjct 507 CTCTCCTACCATGTGTACATAGTACACAT----CCGCAGCTTCGGTCTATGGCTTA-GCC 453 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| ||||| Sbjct 452 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGA 393 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| |||||| || |||| || ||||||||| || Sbjct 392 TGGCTGCTTCTAAGCCAACCTCCTGACTGTCTATGCCTTCCCACTTCGTTTCCCACTTAG 333 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || | |||||| ||||||||| | |||||| ||||||||||| Sbjct 332 CCA-TAGTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 289 >seq115184 Length=93111 Score = 201 bits (222), Expect = 3e-49 Identities = 292/405 (72%), Gaps = 17/405 (4%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| | || || ||| | | | | Sbjct 66942 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 67001 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCA 122 ||| ||||||| ||||| ||| || ||||| | ||||||||||| | ||| Sbjct 67002 GAAACCTTGGACTTACGGCGAGGGGGCTTTTCACCCCCTTTATCGCTACTCATGTCAGCA 67061 Query 123 TTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGACG 181 |||||||| | | ||||| || | |||| || |||||| || || ||| Sbjct 67062 TTCTCACTTCCGATACCTCCAGCATTCC-TCACGGAACACCTTCACAGGCTTACGGAACG 67120 Query 182 CTCCCCTACC-------CA-ACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||| |||||| || | ||||| || ||||||||| || |||| ||| Sbjct 67121 CTCTCCTACCATGTGTACATAGTACACAT----CCGCAGCTTCGGTCTATGGCTTA-GCC 67175 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | | ||| || |||||||||||||||| ||||| ||||| Sbjct 67176 CCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGA 67235 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||||||||||||| |||||| || |||| || ||||||||| || Sbjct 67236 TGGCTGCTTCTAAGCCAACCTCCTGACTGTCTATGCCTTCCCACTTCGTTTCCCACTTAG 67295 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || | |||||| ||||||||| | |||||| ||||||||||| Sbjct 67296 CCA-TAGTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 67339 >seq194959 Length=11641 Score = 161 bits (178), Expect = 2e-37 Identities = 289/408 (71%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||| | || || ||| | | | Sbjct 9976 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 9917 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 || ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 9916 AAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 9858 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || | || ||| | || |||||| | ||| | Sbjct 9857 ATTCGCACTTCTGAT-ACCTCCAGCATCC-GTTACCAGACACCTTCACAGGCCTACAGAA 9800 Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230 ||||| |||||| | || | | |||| | ||||||||| ||||| | | Sbjct 9799 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 9745 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | | ||| || |||||||||||||||| ||||| || Sbjct 9744 GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAA 9685 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 9684 TGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 9625 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 9624 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 9578 >seq52333 Length=5662 Score = 158 bits (174), Expect = 3e-36 Identities = 151/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 || ||||||||| ||| |||||||||| || || | |||| | || ||||||||| Sbjct 3969 CCGCAGCTTCGGTATATAGTTTAAGCCCCGTTAAATCTTTCGCGCAGGATGACTTGACCA 4028 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||| Sbjct 4029 GTGAGCTATTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTG 4088 Query 327 CGCAACT-CCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 | | || ||||||| ||| |||| | | | || ||| ||||||||| | ||||| Sbjct 4089 AG-ACCTCCCACATCGTTTTTCACTTAACTATAATTTTGGGACCTTAGCTGGCGGTCTGG 4147 Query 386 GCTGTTTCCCT 396 ||||||||||| Sbjct 4148 GCTGTTTCCCT 4158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175302690816