Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq115184 232 6e-59 seq194959 214 1e-53 seq122191 159 3e-37 seq121170 109 5e-22 >seq115184 Length=93111 Score = 232 bits (256), Expect = 6e-59 Identities = 148/161 (92%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | |||||||||||||| |||||| |||| ||||||||||||| Sbjct 69163 TCGAGTTGCAGACTGCGATCCGGACTACGATCGGGTTTCTGAGATTGGCTCCCCCTCGCG 69222 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 69223 GGTTGGCGACCCTCTGTCCCGACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 69282 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 69283 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 69323 >seq194959 Length=11641 Score = 214 bits (236), Expect = 1e-53 Identities = 144/161 (89%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| |||| ||||||| ||||||||||||| Sbjct 7763 TCGAGTTGCAGACTGCGATCCGGACTACGACTGGCTTTGTGGGATTGGCTCCCCCTCGCG 7704 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| ||||||||| ||||||||||||||||| ||||| ||| |||||||||| Sbjct 7703 GGTTGGCAACCCTCTGTACCAGCCATTGTATGACGTGTGTAGCCCCACCTATAAGGGCCA 7644 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 7643 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 7603 >seq122191 Length=2357 Score = 159 bits (176), Expect = 3e-37 Identities = 134/162 (83%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| || || ||||| | ||||||||||||||||| Sbjct 1893 TCGAGTTGCAGAGAACAATCCGAACT--GAGACGACTTTTGGAGATTAGCTCCCCCTCGC 1950 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | || |||| ||||| |||||||| ||||||| |||||| | |||||||| Sbjct 1951 GGGATTGCTGCCCACTGTAGTCGCCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCC 2010 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||||||||||||||||| || |||| Sbjct 2011 ATGATGACTTGACGTCATCCCCACCTTCCTCCGGCTTATCAC 2052 >seq121170 Length=1835 Score = 109 bits (120), Expect = 5e-22 Identities = 124/163 (76%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| ||||||| ||| || || |||| || |||| || | || Sbjct 1223 TCGAGTTGCAGAGCCCAATCCGAACT--GAGACGGCTTTTTGAGATTTGCGAAGGGTTGC 1280 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || ||| ||| |||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 1281 CCCTTAGCGTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 1340 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||||||||||||||||||||||||||||||| ||| || |||| Sbjct 1341 ATGAGGACTTGACGTCATCCCCACCTTCCTCGCGGCTTATCAC 1383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415213811480