Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq194959 230 4e-58 seq115184 206 4e-51 seq121170 77.0 5e-12 >seq194959 Length=11641 Score = 230 bits (254), Expect = 4e-58 Identities = 225/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| | |||| |||||||||| ||||| Sbjct 7219 CCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGGGATTGCCTTCGCCATCGGTGT 7160 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | |||| Sbjct 7159 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTGCCGCAC 7100 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||| ||||||||| |||||||||| | ||||||||||| || Sbjct 7099 TCCAGCGATGCAGTCACAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGTCT 7040 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | | |||||| | | | |||||| |||| ||| |||| ||||||| || |||||| Sbjct 7039 TACATCACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACG 6980 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 6979 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTA 6930 >seq115184 Length=93111 Score = 206 bits (228), Expect = 4e-51 Identities = 222/291 (76%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| | || ||||||||| | | ||| || | |||||||||| ||| Sbjct 69707 CCCACGCTTTCGTGTCTGAGCGTCAGT-ATTATCCCAGGGGGCTGCCTTCGCCATCGGTA 69765 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| ||||||||||||||||| ||||||| ||||||| ||||| | Sbjct 69766 TTCCTCCACATATCTACGCATTTCACTGCTACACGTGGAATTCTACCCCCCTCTGACATA 69825 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || ||||| |||||||| |||||||||| | |||||||||| | Sbjct 69826 CTCTAGCTCGGCAGTTAAAAATGCAGTTCCAAGGTTGAGCCCTGGGATTTCACATCTTTC 69885 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || || |||||||||| | |||||| |||| ||| |||| |||||||||| ||||| Sbjct 69886 TTTCCGAACCGCCTACACACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTAC 69945 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||||||||||| |||||||| ||| || Sbjct 69946 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTGCAGATA 69996 >seq121170 Length=1835 Score = 77.0 bits (84), Expect = 5e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 1772 CCCACGCTTTCGTGCCTCAGCGTCAGTATCGGGCCAGTGAGCCGCCTTCGCCACTGGTGT 1831 Query 61 TC 62 || Sbjct 1832 TC 1833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827233670564