Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq194959 176 3e-42 seq123339 165 6e-39 seq115184 165 6e-39 seq52333 114 9e-24 >seq194959 Length=11641 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| Sbjct 11027 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTG 10968 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||||||||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 10967 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 10908 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 10907 CGTCACGATGTCCGACCGTA 10888 >seq123339 Length=2740 Score = 165 bits (182), Expect = 6e-39 Identities = 120/139 (86%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 1949 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 1890 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | ||| || | |||| |||| || |||||||| ||| |||||||||||||| Sbjct 1889 CTTTCGTACCTGTTCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTAT 1830 Query 121 CACTACGATTTCCGACCGT 139 || ||||||||||||||| Sbjct 1829 CAAGACGATTTCCGACCGT 1811 >seq115184 Length=93111 Score = 165 bits (182), Expect = 6e-39 Identities = 120/139 (86%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 65892 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 65951 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | ||| || | |||| |||| || |||||||| ||| |||||||||||||| Sbjct 65952 CTTTCGTACCTGTTCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTAT 66011 Query 121 CACTACGATTTCCGACCGT 139 || ||||||||||||||| Sbjct 66012 CAAGACGATTTCCGACCGT 66030 >seq52333 Length=5662 Score = 114 bits (126), Expect = 9e-24 Identities = 111/141 (79%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||| |||||||||| | | |||||||||||| ||||| Sbjct 2002 TACCTTTTATCCGTTGAGCGATAGCCCTTCCATAAAGGACTACCGGATCACTAAGACCTA 2061 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | ||| | | |||| |||| || | |||||| ||| |||| |||||| Sbjct 2062 CTTTCGTACCTGTTTGACTTGTCAGTCTCACAGTTAAGCACCCTTATGCCTTTGCAC--A 2119 Query 121 CACT--ACGATTTCCGACCGT 139 || | ||||||||||||||| Sbjct 2120 CAATGCACGATTTCCGACCGT 2140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351356222800