Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq194959 201 1e-49 seq123339 174 1e-41 seq115184 174 1e-41 seq52333 132 5e-29 >seq194959 Length=11641 Score = 201 bits (222), Expect = 1e-49 Identities = 138/156 (88%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| Sbjct 11015 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTGCTTTCGCATCTG 10956 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||| |||| |||||||||||||||||| | |||||||||| Sbjct 10955 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTC 10896 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | |||| ||||||| ||||||||||| Sbjct 10895 CGACCGTAACTAGCGTACCTTCGAACTCCTCCGTTA 10860 >seq123339 Length=2740 Score = 174 bits (192), Expect = 1e-41 Identities = 132/156 (85%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 1937 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 1878 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| |||| |||| ||||||||| |||||||||||||||||| | ||||| || Sbjct 1877 TTCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTATCAAGACGATTTC 1818 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 1817 CGACCGTCTCTAGCGTACCTTCGAACTCCTCCGTTA 1782 >seq115184 Length=93111 Score = 174 bits (192), Expect = 1e-41 Identities = 132/156 (85%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 65904 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 65963 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| |||| |||| ||||||||| |||||||||||||||||| | ||||| || Sbjct 65964 TTCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTATCAAGACGATTTC 66023 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 66024 CGACCGTCTCTAGCGTACCTTCGAACTCCTCCGTTA 66059 >seq52333 Length=5662 Score = 132 bits (146), Expect = 5e-29 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||| |||||||||| || || |||||||||||| ||||| |||||| ||||| Sbjct 2014 GTTGAGCGATAGCCCTTCCATAAAGGACTACCGGATCACTAAGACCTACTTTCGTACCTG 2073 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 | || |||| |||| |||| |||| |||||||| |||||| | |||||| || Sbjct 2074 TTTGACTTGTCAGTCTCACAGTTAAGCACCCTTATGCCTTTGCACACAATGCACGATTTC 2133 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||||| | || ||||| || ||||||||||| Sbjct 2134 CGACCGTGCTGAGGATACCTTTGTACTCCTCCGTTA 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472704954608