Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq52333 269 4e-70 seq115184 251 1e-64 seq194959 248 1e-63 seq123339 244 2e-62 seq45832 73.4 6e-11 >seq52333 Length=5662 Score = 269 bits (298), Expect = 4e-70 Identities = 224/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||||||||| |||||| |||||| ||| |||||||| ||| | Sbjct 1667 GAGGGAGGCTTCTTGCTTAGATGCTTTCAGCGATTATCCTGTCCGTACTTAGCTACCCGG 1726 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| || |||||||||| ||||| ||||||||||||||| Sbjct 1727 CAGTGCCACTGGCGTGACAACCGGAACACCAGAGGTACGTCCACTCCGGTCCTCTCGTAC 1786 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | |||||||||||||| ||| ||||||||| | |||||||||||||||||||| | Sbjct 1787 TAGGAGTAGCTCCTCTCAAATCTCCAACGCCCACGGCAGATAGGGACCGAACTGTCTCAC 1846 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || |||||| ||||||||||| |||||||||||| Sbjct 1847 GACGTTCTAAACCCAGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 1906 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || |||||||||||| Sbjct 1907 GGCTACAGCCCCAGGATGTGATGAGCCGACATCG 1940 >seq115184 Length=93111 Score = 251 bits (278), Expect = 1e-64 Identities = 214/261 (82%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||||||||||||||| ||||| ||||| || ||||| | | || |||| |||||| Sbjct 65571 GCTTAGATGCCTTCAGCGGTTATCTCTTCCGTACGTAGCTACTCGGCAATGCCATTGGCA 65630 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCC 134 ||||| | | |||||| ||| ||||| ||||||||||||||||| | || ||||| Sbjct 65631 TGACAACCGATACACCAGTGGTACGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTCC 65690 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||| | ||| ||||||||| | |||||||||| ||||||||| ||||||| | |||| Sbjct 65691 -GTCAAGTATCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 65749 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 65750 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 65809 Query 255 GGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||| Sbjct 65810 GGATGAGATGAGCCGACATCG 65830 >seq194959 Length=11641 Score = 248 bits (274), Expect = 1e-63 Identities = 213/261 (82%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||||| |||||||| | | || |||| |||| Sbjct 11348 GCTTAGATGCTTTCAGCGGTTATCTCTTCCACACTTAGCTACTCGGCAATGCCACTGGCG 11289 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG-CTCC 134 ||||| | | |||||||||| |||||| ||||||||||||||||| | ||| || | Sbjct 11288 TGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTC 11229 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||||| | | |||||||| |||||||||| ||||||||| ||||||| | |||| Sbjct 11228 -CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 11170 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 11169 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 11110 Query 255 GGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||| Sbjct 11109 GGATGAGATGAGCCGACATCG 11089 >seq123339 Length=2740 Score = 244 bits (270), Expect = 2e-62 Identities = 210/257 (82%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||||||||||||||| ||||| ||||| || ||||| | | || |||| |||||| Sbjct 2501 GCTTAGATGCCTTCAGCGGTTATCTCTTCCGTACGTAGCTACTCGGCAATGCCATTGGCA 2442 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG-CTCC 134 ||||| | | |||||| ||| ||||| ||||||||||||||||| | ||| |||| Sbjct 2441 TGACAACCGATACACCAGTGGTACGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTCC 2382 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||| | ||| ||||||||| | |||||||||| ||||||||| ||||||| | |||| Sbjct 2381 G-TCAAGTATCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 2323 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 2322 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 2263 Query 255 GGATGAGACGAGCCGAC 271 |||||||| |||||||| Sbjct 2262 GGATGAGATGAGCCGAC 2246 >seq45832 Length=36464 Score = 73.4 bits (80), Expect = 6e-11 Identities = 78/103 (76%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232 ||||||| ||||| ||| |||||||||| ||| || ||| |||| ||||| || | Sbjct 29065 CTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATTCAGCG 29124 Query 233 CTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || | || | ||| | |||| || |||||||||||| Sbjct 29125 CTTGGCACATTCTGCTTCCCAATGATGGGAAGAGCCGACATCG 29167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779324384624