Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq115180 170 3e-40 seq121851 165 1e-38 seq121375 165 1e-38 >seq115180 Length=148627 Score = 170 bits (188), Expect = 3e-40 Identities = 201/271 (74%), Gaps = 1/271 (0%) Strand=Plus/Minus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGG 71 ||||||||| || || | |||||| | | |||| | | |||||| || | || |||| Sbjct 77699 GCCGCTGGACTTTGCCGCTTTCCCGGCAG-TGCTGCTGTTTGCGACCTTGTTGCGCCTGG 77641 Query 72 CATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTG 131 | |||||||| ||||| ||||| ||||| || | ||||||| | |||| | ||||| Sbjct 77640 CTTTGAACGTGGCCTCGACGCGAGTGGTACTGATGAACGGCCACAAAGGCCCGGACGCTG 77581 Query 132 CCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTA 191 ||||| ||||||| |||| || ||| | | || | |||||||||| | || ||| Sbjct 77580 CCGGTCAGGTGATTGAGGCTTTTGGTCACTTTCTGGTGGGCGGTAACTTTGCCGTTGGTC 77521 Query 192 TCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGC 251 | | ||||||| ||| ||| | |||||||||||||||||| | |||||||| || || | Sbjct 77520 TGATCGTGTTCGTGATTCTGGTCATCATCAACTTTGTGGTGATTACCAAGGGTGCAGGTC 77461 Query 252 GGATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 | ||| | || ||| | || || |||||||| Sbjct 77460 GTATTGCGGAAGTGGGGGCACGCTTTACCCT 77430 >seq121851 Length=8619 Score = 165 bits (182), Expect = 1e-38 Identities = 201/273 (74%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGG 71 |||||| |||||| | | |||||||| | |||| | | || ||| || | || || | Sbjct 2107 GCCGCTCGATTTCTCCGCCTTCCCGACCG-TGCTGCTGTTCGCCACCTTGTTCCGCCTCG 2165 Query 72 CATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTG 131 | |||||||||||||| || || ||| || ||||||| || || ||| | || || | Sbjct 2166 GCCTCAACGTCGCCTCCACCCGCGTCGTGCTGGTCCACGGGCATGAGGGCGAAGCGGCGG 2225 Query 132 CCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTA 191 |||| | |||||| | | ||||| | |||||||||| | || || ||||| | Sbjct 2226 CCGGCCATGTGATCGAATCATTCGGCACTTTCCTGATCGGCGGCGATTATGTCGTCGGCA 2285 Query 192 TCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGC 251 || | || |||||||||||||||||||||||| | | ||||||||||||||||| || | Sbjct 2286 TCTTCGTCTTCGCGATCCTGATGATCATCAACCTGATCGTGGTGACCAAGGGCGCGGGCC 2345 Query 252 GGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 | | ||||| ||| |||||| || || |||| Sbjct 2346 GCGTCTCCGAAGTGTCCGCGCGCTTCACGCTCG 2378 >seq121375 Length=7781 Score = 165 bits (182), Expect = 1e-38 Identities = 201/273 (74%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 12 GCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGG 71 |||||| |||||| | | |||||||| | |||| | | || ||| || | || || | Sbjct 5627 GCCGCTCGATTTCTCCGCCTTCCCGACCG-TGCTGCTGTTCGCCACCTTGTTCCGCCTCG 5569 Query 72 CATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTG 131 | |||||||||||||| || || ||| || ||||||| || || ||| | || || | Sbjct 5568 GCCTCAACGTCGCCTCCACCCGCGTCGTGCTGGTCCACGGGCATGAGGGCGAAGCGGCGG 5509 Query 132 CCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTA 191 |||| | |||||| | | ||||| | |||||||||| | || || ||||| | Sbjct 5508 CCGGCCATGTGATCGAATCATTCGGCACTTTCCTGATCGGCGGCGATTATGTCGTCGGCA 5449 Query 192 TCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGC 251 || | || |||||||||||||||||||||||| | | ||||||||||||||||| || | Sbjct 5448 TCTTCGTCTTCGCGATCCTGATGATCATCAACCTGATCGTGGTGACCAAGGGCGCGGGCC 5389 Query 252 GGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 | | ||||| ||| |||||| || || |||| Sbjct 5388 GCGTCTCCGAAGTGTCCGCGCGCTTCACGCTCG 5356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 808069956188