Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq48767 86.0 1e-14 seq122167 78.8 2e-12 seq121513 78.8 2e-12 >seq48767 Length=19911 Score = 86.0 bits (94), Expect = 1e-14 Identities = 137/193 (71%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || ||||||| | ||||| | || || || ||| | ||||| |||||||||||||| || Sbjct 6698 AATGCTTCTT-GAGGAATAGCTACTTTACCTACTTGTTTCATACGTTTTTTACCGGCTTT 6756 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT-A 220 || || || | || || || || || ||||||| || || || ||||| || || | Sbjct 6757 CTGTTTTTCCAAAAGTTTTCGTTTTCGTGTTACGTCTCCTCCATAACATTT-ACCTGTCA 6815 Query 221 CGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCT 280 |||| || | | ||||| || ||||| | |||||||| | | || || || |||| Sbjct 6816 CGTTTTTGCGAAACGCCTTCACAGAGGTATGTGCAATGATTTTAGCACCGATTGCAGCCT 6875 Query 281 GGATCGCGACGTC 293 | || || || || Sbjct 6876 GAATAGCTACTTC 6888 >seq122167 Length=2670 Score = 78.8 bits (86), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCC-ACTCGCTTCATGCGTT 148 ||| | || | ||||||||| | | ||||| | |||| ||| | |||| ||| || | Sbjct 1496 AGCGCGGCGATGAAGGCTTCCT-GCGGAATCTGCACGGAGCCATATTCGCG-CATCCGCT 1439 Query 149 TTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGC 208 | || || | || ||||| || |||||||||||||| ||||| | || ||||| || | Sbjct 1438 TCTTGCCCTCTTTCTGCTTGTCCAGCAGCTTGCGCTTGCGGCTGATATCGCCGCCATAAC 1379 Query 209 ATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTC---CGCGCAATGATCTGCC 265 ||||||| |||| ||| | | || | || ||| ||||| || | || | Sbjct 1378 ATTTGGCGGTCACGTCCTTACGCATCGC---GGCGATCGTCTCGCGCGCGATCACCTTGC 1322 Query 266 CGCCAATGGCGGCCTGGATCGCGA 289 |||| || ||||||||||||| || Sbjct 1321 CGCCGATCGCGGCCTGGATCGGGA 1298 >seq121513 Length=3512 Score = 78.8 bits (86), Expect = 2e-12 Identities = 143/204 (70%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCC-ACTCGCTTCATGCGTT 148 ||| | || | ||||||||| | | ||||| | |||| ||| | |||| ||| || | Sbjct 1139 AGCGCGGCGATGAAGGCTTCCT-GCGGAATCTGCACGGAGCCATATTCGCG-CATCCGCT 1196 Query 149 TTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGC 208 | || || | || ||||| || |||||||||||||| ||||| | || ||||| || | Sbjct 1197 TCTTGCCCTCTTTCTGCTTGTCCAGCAGCTTGCGCTTGCGGCTGATATCGCCGCCATAAC 1256 Query 209 ATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTC---CGCGCAATGATCTGCC 265 ||||||| |||| ||| | | || | || ||| ||||| || | || | Sbjct 1257 ATTTGGCGGTCACGTCCTTACGCATCGC---GGCGATCGTCTCGCGCGCGATCACCTTGC 1313 Query 266 CGCCAATGGCGGCCTGGATCGCGA 289 |||| || ||||||||||||| || Sbjct 1314 CGCCGATCGCGGCCTGGATCGGGA 1337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 840009480148