Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq121301 98.7 2e-18 >seq121301 Length=47684 Score = 98.7 bits (108), Expect = 2e-18 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 177 TCGGCGCGCTCCAGGTAACGCGACATCCAATACA-GATCTGCAGCTGTTCTACGCAGCAT 235 || ||||| || | ||| || | |||||| | | | ||| | || || | | |||||| Sbjct 6579 TCCGCGCGTTCGATGTAGCGGGCCATCCAGAAGATGTTCT-CTGCGGTGCGGCTCAGCAT 6521 Query 236 ACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACC 295 | |||| | |||| |||||||||||| || || ||||| ||||| || || || ||| Sbjct 6520 A-TCAGTCGTCCAGCACCCAGGTGTCTTTTACCCCGCCGCCCTGCGAGGAATTCACCACC 6462 Query 296 AGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCG 345 ||||| || || ||||||||||||| |||| || ||||||| ||| || Sbjct 6461 AGCGATCCCTCGGTCAGCGCCACGCGCGTCAGCCCGCCGGGCAGCAGCCG 6412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1117815059200