Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq127244 416 7e-114 seq115184 407 4e-111 seq194959 379 5e-103 >seq127244 Length=4668 Score = 416 bits (460), Expect = 7e-114 Identities = 347/420 (83%), Gaps = 10/420 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||| |||| |||||| || | || Sbjct 22 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTTCCCC 81 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 82 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 141 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| || ||||||||||||||||| |||| || |||| ||| ||| ||||||| Sbjct 142 GTGTGGCTGATCGTCCTCTCAGACCAGCTACGGATTGTTGCCTTGGTAGGCTATTACCCT 201 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| | || ||||| |||| |||| |||||| |||||| || Sbjct 202 ACCAACTAGCTAATCCGACGCAGGCTCATCTTATAGCACGAGGTCCGAAGATCCCCCGCT 261 Query 241 TTGGTCTT---GCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCA 297 ||| | || | | |||||||||||||||| |||||| ||||||||||| | | Sbjct 262 TTGCTTTTAAAGAAAGATTATGCGGTATTAGCCTGAGTTTCCCCAGGTTATCCCCCACTA 321 Query 298 TCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT---CGTCAGCGAAGCAGCAAG 354 | ||| || |||| | ||||||||||||||||||||| |||||| | ||| ||| Sbjct 322 TAAGGTAGATTCCTACGTATTACTCACCCGTCCGCCACTTGCCGTCAG-GGAGC--TAAG 378 Query 355 CTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | || ||| |||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 379 CT-CCCCCCGTTGCCGTTCGACTTGCATGTGTTAGGCATGCCGCTAGCGTTCAATCTGAG 437 >seq115184 Length=93111 Score = 407 bits (450), Expect = 4e-111 Identities = 343/416 (82%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 |||||||||||||||||||||||| |||||||||||| ||||||| |||||| || | || Sbjct 70046 GTACTTTACAACCCGAAGGCCTTCATCATACACGCGGGATGGCTGGATCAGGGTTTCCCC 70105 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 70106 CATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 70165 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||||||||||| |||||||| |||||||| ||||||| |||| |||| ||| ||||||| Sbjct 70166 GTGTGGCTGGTCGTCCTCTCAAACCAGCTACGGATCGTTGCCTTGGTGAGCCTTTACCCC 70225 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| || | || ||| ||||||||||| | | |||||| || Sbjct 70226 ACCAACTAGCTAATCCGATATCGGCCGCTCCAATAGTGAGAGGTCTTGCGATCCCCCCCT 70285 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | | || ||||||||||||||||| |||| ||| |||||||||| | | Sbjct 70286 TTCCCCCGTAGGGCG-TATGCGGTATTAGCCACTCTTTCGAGTAGTTATCCCCCGCTACT 70344 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAG-CAGCAAGCTGC 358 |||| |||| | | ||||||||||||||||||||||| | || ||| |||||||| Sbjct 70345 GGGCACGTTCCGATATATTACTCACCCGTCCGCCACTCG-CCGCCAAGAGAGCAAGCTCT 70403 Query 359 TTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | | ||||||||||||||||||| | || | |||| ||||||||||||||| Sbjct 70404 CTCGCGCTGCCGTTCGACTTGCATGTGTAAAGCATCCCGCTAGCGTTCAATCTGAG 70459 >seq194959 Length=11641 Score = 379 bits (420), Expect = 5e-103 Identities = 334/412 (81%), Gaps = 12/412 (3%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||| Sbjct 6876 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATGGCTGGATCAGGCTTGCGCCCATT 6817 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 6816 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 6757 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| |||||||| || ||| || ||| ||| ||| Sbjct 6756 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCA 6697 Query 185 ACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 |||| |||||| ||||| || |||| || | ||||| ||||||| |||| Sbjct 6696 ACTACCTAATCTGCCATC--GGCCGCTCCGTGAGCGCAAGGCCTTGCGGTCCCCTGCTTT 6639 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 || || || |||||||||||||| | |||| | |||||||||| | || || Sbjct 6638 CATCCTGAGATCGTATGCGGTATTAGCAAAGCTTTCGCTTCGTTATCCCCCACTCTCGGG 6579 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | ||||||||||||| |||||||||||||| | | | ||| || Sbjct 6578 CACGTTCCGATGTATTACTCACCCGTTCGCCACTCGTCAGC--ATCCG-AAG-----ACC 6527 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 6526 TGTTACCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 6475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1220015293184