Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq194959 288 3e-75 seq115184 286 1e-74 seq127244 237 5e-60 >seq194959 Length=11641 Score = 288 bits (318), Expect = 3e-75 Identities = 272/349 (78%), Gaps = 26/349 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||||| | ||| |||||||||| |||||||| ||||| | ||||||| Sbjct 6686 GATTAGGTAGTTGGTGGGATAAAAGCTTACCAAGCCGACGATCTGTAGCTGGTCTGAGAG 6745 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | || | |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct 6746 GACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGG 6805 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||| ||| ||||||||| ||||||||| |||| | |||||||| |||||||||||| Sbjct 6806 GAATTTTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGCAGGATGAAGGCCTT 6865 Query 347 CGGGTCGTAAA--GC-TCTGTCCTCAAGGAAGATA----------------------ATG 381 ||||| ||||| || | ||| | || ||| | | ||| Sbjct 6866 CGGGTTGTAAACTGCTTTTGTACGGAACGAAAAGACTCCTTCTAATAAAGGGGGTCCATG 6925 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||||||| | || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 6926 ACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 6985 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | || ||||||| |||||||||| |||||||||| ||||| ||| ||| Sbjct 6986 GTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGT 7033 >seq115184 Length=93111 Score = 286 bits (316), Expect = 1e-74 Identities = 272/353 (77%), Gaps = 26/353 (7%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 || ||||||||||||||| ||||| |||| |||||||| |||||| ||||| | ||| Sbjct 70243 TCGGATTAGCTAGTTGGTGGGGTAAAGGCTCACCAAGGCAACGATCCGTAGCTGGTTTGA 70184 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 70183 GAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 70124 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| |||||||| ||| |||||| |||| | ||||||| ||||||||| Sbjct 70123 GGGGAATTTTGGACAATGGGGGAAACCCTGATCCAGCCATCCCGCGTGTATGATGAAGGC 70064 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA------------------------ 379 |||||||| |||||| || | || ||||| || Sbjct 70063 CTTCGGGTTGTAAAGTACTTTTGGCAGAGAAGAAAAGGTATCTCCTAATACGGGATACTG 70004 Query 380 -TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||| || || |||| |||||||||||||||||||||||||||||||||||| Sbjct 70003 CTGACGGTATCTGCAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 69944 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| || ||||||| |||||||||| |||||||||| ||| ||||| |||| Sbjct 69943 AGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGTGTAGGCGGTT 69892 >seq127244 Length=4668 Score = 237 bits (262), Expect = 5e-60 Identities = 264/347 (76%), Gaps = 8/347 (2%) Strand=Plus/Minus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || ||||||||||||||||| ||| || || || || | || ||||||| | | Sbjct 360 AGTGGCGGACGGGTGAGTAATACGTAGG-AATCTACCTTATAGTGGGGGATAACCTGGGG 302 Query 83 AAAGGTATGCTAATACGAGATAATATA-CTTTTATCGCAT---GGTAGAAGTATCAAAGC 138 ||| | |||||||| ||||| | |||| | ||| || || | || | | Sbjct 301 AAACTCAGGCTAATACCGCATAATCTTTCTTTAAAAGCAAAGCGGGGGATCT-TCGGACC 243 Query 139 TCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198 || || || | ||| || ||||| |||||||||||||||| ||||| || ||||| Sbjct 242 TCGTGC--TATAAGATGAGCCTGCGTCGGATTAGCTAGTTGGTAGGGTAATAGCCTACCA 185 Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258 |||| || ||| ||||| | |||||||| |||| |||||| ||| |||||||||||| Sbjct 184 AGGCAACAATCCGTAGCTGGTCTGAGAGGACGATCAGCCACACTGGGACTGAGACACGGC 125 Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318 ||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||| || Sbjct 124 CCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCA 65 Query 319 GCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTC 365 |||| |||||||| | || |||||||||||||| ||||||| || || Sbjct 64 GCAATGCCGCGTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1494678422016