Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq115184 340 4e-91 seq194959 331 2e-88 seq121170 187 6e-45 >seq115184 Length=93111 Score = 340 bits (376), Expect = 4e-91 Identities = 317/398 (80%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 69984 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 69925 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||| ||||| |||| ||| ||| |||||| | | || Sbjct 69924 GAATTACTGGGCGTAAAGCGTGTGTAGGCGGTTCGGAAAGAAAGATGTGAAATCCCAGGG 69865 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT--GCAGGAGGGGCAAGTGGA 190 ||||||| || ||||| ||| |||||| | |||||||| | |||||| || || Sbjct 69864 CTCAACCTTGGAACTGCATTTTTAACTGCCGAGCTAGAGTATGTCAGAGGGGG--GTAGA 69807 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||| || Sbjct 69806 ATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAATACCGATGGCGAAGGCAGC 69747 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||| | |||||| || || | |||||||||||||||||||||||||||||||| Sbjct 69746 CCCCTGGGATAATACTGACGCTCAGACACGAAAGCGTGGGGAGCAAACAGGATTAGATAC 69687 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT 370 |||||||||||||||| ||||||||| ||||| ||| ||||| | | || || || Sbjct 69686 CCTGGTAGTCCACGCCCTAAACGATGTCAACTAGCTGTTGGGGC-CGTTAG-GCCTTAGT 69629 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| |||| || ||||||||||| Sbjct 69628 AGCGCAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTA 69591 >seq194959 Length=11641 Score = 331 bits (366), Expect = 2e-88 Identities = 314/398 (79%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 6942 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 7001 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||| ||| ||| |||| |||| |||||| | || Sbjct 7002 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTGATGTAAGACAGATGTGAAATCCCCGGG 7061 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG--GAGGGGCAAGTGGA 190 ||||||| || ||||| |||| |||||| ||| |||||| | |||||| | |||| Sbjct 7062 CTCAACCTGGGAACTGCATTTGTGACTGCATCGCTGGAGTGCGGCAGAGGGGGA--TGGA 7119 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct 7120 ATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAAT 7179 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||| | |||||| || | || |||||||||||||||||||||||||||||||| Sbjct 7180 CCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATAC 7239 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGT 370 |||||||||||||||| ||||||||| ||| | ||| ||| | | | || | || Sbjct 7240 CCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGG--TCTTCACTGACTCAGT 7297 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| ||||| |||| || ||||||||||| Sbjct 7298 AACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTA 7335 >seq121170 Length=1835 Score = 187 bits (206), Expect = 6e-45 Identities = 150/180 (83%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 ||||||||||||||||||||||| |||| | | |||||| ||||||| |||||||||| Sbjct 1833 GAACACCAGTGGCGAAGGCGGCTCACTGGCCCGATACTGACGCTGAGGCACGAAAGCGTG 1774 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||||||||||||||||||||||||||||||||||||||||||||||| | || || Sbjct 1773 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGT 1714 Query 349 CGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | || | | | ||| |||||| ||||| |||| ||||| ||||||||||| Sbjct 1713 TGGAAAGTTTACTT--TTCAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTA 1656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200852749312