Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq194959 515 1e-143 seq149210 461 3e-127 seq115184 461 3e-127 seq123339 379 7e-103 seq52333 320 6e-85 seq122191 208 3e-51 seq121653 199 1e-48 seq194978 165 3e-38 >seq194959 Length=11641 Score = 515 bits (570), Expect = 1e-143 Identities = 422/503 (84%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGAC---AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACC 57 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 9238 TCGAGTCCGAATAGGGCGAATTTAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATC 9297 Query 58 CATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAA 117 |||||||||||||||||||| |||||| | |||||||||||||||||||| ||||| || Sbjct 9298 CATGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCCACTAGTGTTGCAA 9357 Query 118 AATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTT 177 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 9358 AACTAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTT 9417 Query 178 CTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTA 237 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 9418 CTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTT 9477 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTT 296 |||||||||||||| ||||||||||||||| |||||||||||||| |||| || Sbjct 9478 AGGCTAGGGGGTCATGGCGACTTACCAAACCTATGCAAACTCCGAATACCGCA-GAG--- 9533 Query 297 TACCGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 ||| || ||||| || ||| ||||||||| ||||| | | ||||| || || || Sbjct 9534 TACAGCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCA 9593 Query 354 GACTATCAGCTAAGGCCCCGAAA--TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 ||| ||||||||| ||| ||| || ||||||| | |||||||| || ||| Sbjct 9594 GACCGCCAGCTAAGGTCCCTAAAATTG---GCTAAGTGGGA--AACGAAGTGGGAAGGCT 9648 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 || |||| ||||||||||||| |||||||||| ||||||||||| |||||| |||||| Sbjct 9649 AAAACAGTCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCA 9707 Query 472 CTAGTCGAGGAGTCGGGCGTGGA 494 || ||||| ||| ||| ||| Sbjct 9708 CTGATCGAGTCGTCCTGCGCGGA 9730 >seq149210 Length=2481 Score = 461 bits (510), Expect = 3e-127 Identities = 408/500 (82%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||||||| |||||| ||||||||||||||||||||||||||| | |||||| ||| Sbjct 1182 CGAGTCCGAATAGGGCGGTTCAGTCGCTGGGTGTAGACCCGAAACCAGGCGATCTATCCA 1241 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1242 TGGCCAGGTTGAAGGCACGGTAACACGTGCTGGAGGACCGAACCCACTAATGTTGAAAAA 1301 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||||||||||||||| | || |||||||||||||||| | |||| |||||||||||| Sbjct 1302 TTAGGGGATGAGCTGTGGATCGGAGTGAAAGGCTAAACAAGCCTGGAGATAGCTGGTTCT 1361 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 1362 CTCCGAAAACTATTTAGGTAGTGCCTCGTATATTACTGCCGGGGGTAGAGCACTGTTATG 1421 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--GCATCAGTTTT 297 |||||||||||| |||||||||||| |||| ||||||||||||| | ||| || | Sbjct 1422 GCTAGGGGGTCACAGCGACTTACCAACCCATGGCAAACTCCGAATACCGGCA--AG---T 1476 Query 298 ACCG--CGGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || | |||||| || ||| ||||||||| ||||| | | ||||| || || || | Sbjct 1477 ACAGTACGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAG 1536 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || ||||||||| ||| || | | ||||||| | |||||||| || || || Sbjct 1537 ACCGCCAGCTAAGGTCCCTAACT-ATGGCTAAGTGGGA--AACGAAGTGGGAAGGCATAG 1593 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| |||| |||||||| |||||||||| || |||||||| |||||| |||||||| Sbjct 1594 ACAGTCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTG 1652 Query 475 GTCGAGGAGTCGGGCGTGGA 494 ||||| ||| ||| ||| Sbjct 1653 ATCGAGTCGTCCTGCGCGGA 1672 >seq115184 Length=93111 Score = 461 bits (510), Expect = 3e-127 Identities = 408/500 (82%), Gaps = 16/500 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||||||| |||||| ||||||||||||||||||||||||||| | |||||| ||| Sbjct 67677 CGAGTCCGAATAGGGCGGTTCAGTCGCTGGGTGTAGACCCGAAACCAGGCGATCTATCCA 67618 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||| Sbjct 67617 TGGCCAGGTTGAAGGCACGGTAACACGTGCTGGAGGACCGAACCCACTAATGTTGAAAAA 67558 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||||||||||||||| | || |||||||||||||||| | |||| |||||||||||| Sbjct 67557 TTAGGGGATGAGCTGTGGATCGGAGTGAAAGGCTAAACAAGCCTGGAGATAGCTGGTTCT 67498 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 67497 CTCCGAAAACTATTTAGGTAGTGCCTCGTATATTACTGCCGGGGGTAGAGCACTGTTATG 67438 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--GCATCAGTTTT 297 |||||||||||| |||||||||||| |||| ||||||||||||| | ||| || | Sbjct 67437 GCTAGGGGGTCACAGCGACTTACCAACCCATGGCAAACTCCGAATACCGGCA--AG---T 67383 Query 298 ACCG--CGGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || | |||||| || ||| ||||||||| ||||| | | ||||| || || || | Sbjct 67382 ACAGTACGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAG 67323 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || ||||||||| ||| || | | ||||||| | |||||||| || || || Sbjct 67322 ACCGCCAGCTAAGGTCCCTAACT-ATGGCTAAGTGGGA--AACGAAGTGGGAAGGCATAG 67266 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| |||| |||||||| |||||||||| || |||||||| |||||| |||||||| Sbjct 67265 ACAGTCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTG 67207 Query 475 GTCGAGGAGTCGGGCGTGGA 494 ||||| ||| ||| ||| Sbjct 67206 ATCGAGTCGTCCTGCGCGGA 67187 >seq123339 Length=2740 Score = 379 bits (420), Expect = 7e-103 Identities = 354/441 (80%), Gaps = 14/441 (3%) Strand=Plus/Plus Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 || ||| || |||||| |||||||||| ||||||| |||||||||||||||||||||| Sbjct 10 ATCGCCTGGTTGAAGGCACGGTAACACGTGCTGGAGGACCGAACCCACTAATGTTGAAAA 69 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||||||||||||||||||| | || |||||||||||||||| | |||| ||||||||||| Sbjct 70 ATTAGGGGATGAGCTGTGGATCGGAGTGAAAGGCTAAACAAGCCTGGAGATAGCTGGTTC 129 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||||||||||||||||||||||| ||| || |||||||||||||||||||| Sbjct 130 TCTCCGAAAACTATTTAGGTAGTGCCTCGTATATTACTGCCGGGGGTAGAGCACTGTTAT 189 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--GCATCAGTTT 296 ||||||||||||| |||||||||||| |||| ||||||||||||| | ||| || Sbjct 190 GGCTAGGGGGTCACAGCGACTTACCAACCCATGGCAAACTCCGAATACCGGCA--AG--- 244 Query 297 TACCG--CGGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 ||| | |||||| || ||| ||||||||| ||||| | | ||||| || || || Sbjct 245 TACAGTACGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCA 304 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| ||||||||| ||| || | | ||||||| | |||||||| || || | Sbjct 305 GACCGCCAGCTAAGGTCCCTAACT-ATGGCTAAGTGGGA--AACGAAGTGGGAAGGCATA 361 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||||| |||| |||||||| |||||||||| || |||||||| |||||| |||||||| Sbjct 362 GACAGTCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACT 420 Query 474 AGTCGAGGAGTCGGGCGTGGA 494 ||||| ||| ||| ||| Sbjct 421 GATCGAGTCGTCCTGCGCGGA 441 >seq52333 Length=5662 Score = 320 bits (354), Expect = 6e-85 Identities = 395/531 (74%), Gaps = 8/531 (2%) Strand=Plus/Minus Query 32 GTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTG 91 ||| |||||||||| | |||||| | ||| ||||| ||||||| |||||| ||| Sbjct 4465 GTAAACCCGAAACCGGGCGATCTATCTATGACCAGGGTGAAGGTCAAGTAACATTGACTG 4406 Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||| |||||||||||| |||||||||| ||||||||||| ||| | |||| ||||||| Sbjct 4405 GAGGCCCGAACCCACTACTGTTGAAAAAGTAGGGGATGAGTTGTAGATAGGAGTGAAAGA 4346 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTA 211 |||| ||| || ||||||||||||||||| ||||| |||||||||||| ||||| ||| Sbjct 4345 CTAATCAAGCTCGGAAATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCGTGTA 4286 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATT 271 | || | ||||||||||||||||| |||||| || | | | | | |||||| Sbjct 4285 TGACTCTTGGGGGTAGAGCACTGTTTTGGCTAAAAGG-CTTCCCAGCCTGTTAAACCAAG 4227 Query 272 GCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCG 331 ||||||||||||| | | ||||||| | ||||| | | ||||| ||||||||| Sbjct 4226 GCAAACTCCGAATACCAAGAAGTTTTAGCATGGGAGACACACTACGGGTGATAAGGTCCG 4167 Query 332 TGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAA 391 || | ||| || | || ||| ||||||||| ||| |||| | || ||||| || Sbjct 4166 TGGTGAAAAGGGAAACAGCCCAGACCGCCAGCTAAGGTCCCAAAATTATAGTTAAGTGAA 4107 Query 392 ACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTT 451 | ||||| || || || ||||||| |||| |||||||| |||||||||| || ||| Sbjct 4106 A--AACGATGTGGGAGGTCTCAGACAGCCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTT 4050 Query 452 AAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTG-GATAATAATCGGGTATTA 510 ||||| |||||| |||||||| ||| || || ||| | | | | | |||| ||| Sbjct 4049 AAAGAAAGCGTAATAGCTCACTGGTCAAGTCATCCTGCGCGAAAGATTTAACGGGGCTTA 3990 Query 511 AGTTGTCTACCGAAGCAGTGG-GATCATTTAT-ATGATC-GGTAGGGGAGC 558 | | | ||||||||| | || | || ||| | | || | ||||| ||||| Sbjct 3989 AACTATATACCGAAGCTGCGGAGCTCTTTTTTAAAGAGCTGGTAGAGGAGC 3939 >seq122191 Length=2357 Score = 208 bits (230), Expect = 3e-51 Identities = 172/208 (83%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTA---GACCCGAAACCAAGTGATCTACCC 58 |||||| ||| |||||||| | | | | |||| ||||||||||| | |||||| | Sbjct 219 CGAGTCTGAATAGGGCGACT-TAGTTTGATGTATTAGACCCGAAACCCGGCGATCTAGGC 161 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| Sbjct 160 ATGACCAGGATGAAGGTGCGGTAACACGCACTGGAGGTCCGAACCGGTTAACGTTGAAAA 101 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||| |||| |||||||||||||| || ||| | ||||||||||||||| Sbjct 100 GTTATCGGATGAGTTGTGTTTAGGGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGTTC 41 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTC 206 || ||||||||||| |||||||||||| Sbjct 40 TCCGCGAAAACTATTGAGGTAGTGCCTC 13 >seq121653 Length=1795 Score = 199 bits (220), Expect = 1e-48 Identities = 170/208 (82%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTA---GACCCGAAACCAAGTGATCTACCC 58 |||||| ||| ||||||| | | | | |||| ||||||||||| | |||||| | Sbjct 1584 CGAGTCTGAATAGGGCGATT-TAGTTTGATGTATTAGACCCGAAACCCGGCGATCTAGGC 1642 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| |||||||||||||| |||||||| | ||||||||||||||| | ||| |||||||| Sbjct 1643 ATGACCAGGATGAAGGTGGGGTAACACCCACTGGAGGTCCGAACCGATTAACGTTGAAAA 1702 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||| |||| |||||||||||||| || ||| | ||||||||||||||| Sbjct 1703 GTTACCGGATGAGTTGTGTTTAGGGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGTTC 1762 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTC 206 || ||||||||||| |||||||||||| Sbjct 1763 TCCGCGAAAACTATTGAGGTAGTGCCTC 1790 >seq194978 Length=1758 Score = 165 bits (182), Expect = 3e-38 Identities = 162/207 (78%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| || ||| || | ||||||||||||| ||||||||| ||| Sbjct 214 CGAGTCTTAATAGGGCGCCAAGTTCGTTGTAT-TAGACCCGAAACCTAGTGATCTAGCCA 156 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| |||||||| | ||||||| |||||| |||||||||| Sbjct 155 TGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAA 96 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 95 GACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCT 36 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC 206 | ||||| |||||||||| ||||| Sbjct 35 CCGCGAAAGATATTTAGGTATCGCCTC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1686303860736