Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq194959 271 1e-70 seq149210 255 1e-65 seq115184 255 1e-65 seq52333 253 4e-65 seq122191 125 1e-26 seq121653 122 2e-25 seq194978 102 1e-19 seq194357 102 1e-19 seq121170 102 1e-19 >seq194959 Length=11641 Score = 271 bits (300), Expect = 1e-70 Identities = 253/320 (79%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||| Sbjct 8625 AGAGCATGTGGTGGATGCCTTGGCGATTACAGGCGACGAAAGACGTGATAGCCTGCGATA 8684 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | | |||||||| ||||||| |||||||||||||| | Sbjct 8685 AGCTTCGGGGAGCTGGCAAATAAGCATTGATCCGGAGATTTCTGAATGGGGAAACCCACC 8744 Query 121 CCTTTGG-GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAA 179 | | | || |||| |||||||||||||||||| | |||||| || ||||||||| Sbjct 8745 TCGCAAGAGGTATCGCATACTGAATACATAGGTATGCGAGGCGAACCGGGTGAACTGAAA 8804 Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 ||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 8805 CATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAAA 8864 Query 240 TGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCA 299 | ||| ||||||| | ||||| | || ||| || |||||| |||| Sbjct 8865 TCGGAAGAGCCTTCTAGTGATAGCACGACTGTTAGCAAAACGGGATGGAAAGCCCGGCCA 8924 Query 300 TAGCGGGTGATAGCCCCGTA 319 |||| ||||||||||| ||| Sbjct 8925 TAGCAGGTGATAGCCCTGTA 8944 >seq149210 Length=2481 Score = 255 bits (282), Expect = 1e-65 Identities = 256/326 (79%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| ||| |||||||||||||||| ||||||||||||||||| ||||| ||||| | Sbjct 562 AGTGCATATGATGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGTAGCCTGCGAAA 621 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| | Sbjct 622 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCC-AC 680 Query 121 CCT-----TTGGGTCATTGCATGCTGAATACATAGGTATG-CAAAGCGAACGCGGCGAAC 174 | | | ||| || ||||||||||||||||| ||| | |||||| | |||| Sbjct 681 CGTAGTAATACGGT-ATCCCATGCTGAATACATAGGCATGTGGAGGCGAACCGAGTGAAC 739 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||| ||||| |||| || ||||||||||||||||||||||||| ||||||||||||| Sbjct 740 TGAACCATCTCAGTAACTCGAGGAAAAGAAATCAACCGAGATTCCGGAAGTAGTGGCGAG 799 Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTG-ATAGTGGAATCCTCTGGAAATAG 293 ||||| ||| ||||| | | ||| | |||| ||||| |||| |||||| Sbjct 800 CGAAACCGGACCAGCCTGGATGTTTTAG-CGTATTGAATAGTCGAATGGAATGGAAAGTC 858 Query 294 GAGCCATAGCGGGTGATAGCCCCGTA 319 |||| |||| ||||||||||| ||| Sbjct 859 CAGCCGTAGCAGGTGATAGCCCTGTA 884 >seq115184 Length=93111 Score = 255 bits (282), Expect = 1e-65 Identities = 256/326 (79%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| ||| |||||||||||||||| ||||||||||||||||| ||||| ||||| | Sbjct 68297 AGTGCATATGATGGATGCCTTGGCGATCACAGGCGATGAAGGACGCGGTAGCCTGCGAAA 68238 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| | Sbjct 68237 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCC-AC 68179 Query 121 CCT-----TTGGGTCATTGCATGCTGAATACATAGGTATG-CAAAGCGAACGCGGCGAAC 174 | | | ||| || ||||||||||||||||| ||| | |||||| | |||| Sbjct 68178 CGTAGTAATACGGT-ATCCCATGCTGAATACATAGGCATGTGGAGGCGAACCGAGTGAAC 68120 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||| ||||| |||| || ||||||||||||||||||||||||| ||||||||||||| Sbjct 68119 TGAACCATCTCAGTAACTCGAGGAAAAGAAATCAACCGAGATTCCGGAAGTAGTGGCGAG 68060 Query 235 CGAAATGGGATGAGCCTTTACGAGATAGTTGAATTG-ATAGTGGAATCCTCTGGAAATAG 293 ||||| ||| ||||| | | ||| | |||| ||||| |||| |||||| Sbjct 68059 CGAAACCGGACCAGCCTGGATGTTTTAG-CGTATTGAATAGTCGAATGGAATGGAAAGTC 68001 Query 294 GAGCCATAGCGGGTGATAGCCCCGTA 319 |||| |||| ||||||||||| ||| Sbjct 68000 CAGCCGTAGCAGGTGATAGCCCTGTA 67975 >seq52333 Length=5662 Score = 253 bits (280), Expect = 4e-65 Identities = 248/316 (78%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||||||||||| | | ||||||| |||||||||||||||||||||||||| || Sbjct 5109 ATGGTGGATGCCTTGGCAGTAAGAGGCGATAAAGGACGTAGTAGCTTGCGATAAGCTTCG 5050 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG- 126 || || ||||||| | ||||||| ||||||||||||||| |||||| || |||| Sbjct 5049 GGAAGCTGGCAAACAAGCAATGATCCGGAGATTTCCGAATGGGAAAACCCAACCTTTTGA 4990 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAA 186 ||| ||| |||| ||| |||||||| ||||||||| || |||||||||||||||| Sbjct 4989 GGTTATTATGTGCTAAATTCATAGGTACATAAAGCGAACCTGGAGAACTGAAACATCTAA 4930 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||| | ||||||| ||||||||||||||||| ||||| ||||||||||| ||| Sbjct 4929 GTACCCAGAGGAAAAAAAATCAACCGAGATTCCGTTAGTAGCGGCGAGCGAAAGCGGAAC 4870 Query 247 AGCC--TTTACGAGAT-AGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGC 303 |||| |||| | || | | | | ||| |||| |||||||| |||||||| Sbjct 4869 AGCCCAGTTACTAAATCATTATTAGTTTTAGCAGAATGTTCTGGAAAGTTCAGCCATAGT 4810 Query 304 GGGTGATAGCCCCGTA 319 ||||||||||||||| Sbjct 4809 AGGTGATAGCCCCGTA 4794 >seq122191 Length=2357 Score = 125 bits (138), Expect = 1e-26 Identities = 192/279 (69%), Gaps = 55/279 (20%) Strand=Plus/Minus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG-- 68 |||||||||||||| ||||||||||||||||||| | | ||||||||||||||| Sbjct 861 GTGGATGCCTTGGCATGTACAGGCGATGAAGGACGTGGCACGCTGCGATAAGCTGCGGTG 802 Query 69 -GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC------ 121 || |||||||| |||||| |||||||||||||||||||||||||| | Sbjct 801 AGGTGTGAGCAA----CCTTTGACCCGCAGATTTCCGAATGGGGAAACCCACTCATCCCG 746 Query 122 ------CTTT-------------------GGGTCATTG------------CA---TGCTG 141 |||| | || |||| || | | Sbjct 745 ATTATTCTTTTCGTGGGAAACCACGGTGAGAGTAATTGGGAGACGAGTATCACTTAACCG 686 Query 142 AAT-ACATAGGTAT-GCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAA 199 ||| | |||||| | | |||||||| ||| |||||||||||||| |||| ||| ||||| Sbjct 685 AATAAAATAGGTTTCGTGAAGCGAACCCGGGGAACTGAAACATCTCAGTACCTGGAGGAA 626 Query 200 AAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||| ||||||||||||||| |||||||||||||||| Sbjct 625 AAGACATCAACCGAGATTCCGTTAGTAGTGGCGAGCGAA 587 >seq121653 Length=1795 Score = 122 bits (134), Expect = 2e-25 Identities = 197/288 (68%), Gaps = 54/288 (19%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| ||||||||||||||||| ||||||||||||||||||| | | ||||||| Sbjct 933 AGGGCAATTGGTGGATGCCTTGGCGCATACAGGCGATGAAGGACGTGGCACGCTGCGATA 992 Query 61 AGCTGCGGGGAG---TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| |||||| ||||||| | |||||||| ||||||||||||||||||||| Sbjct 993 AGCGTGGGGGAGCTGTGAGCAAGC----TTTGATCCCACGATTTCCGAATGGGGAAACCC 1048 Query 118 GGC----CC-----TTTGG----------------------GTCATTGCAT--------- 137 | || ||| | || |||| | Sbjct 1049 ACCTAATCCGATTATTTCGCCCGTCAGAGATGACGGACGGAGTAATTGGAAAAAGGTATC 1108 Query 138 -----GCTGAATACA-TAGGTAT-GCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAG 190 |||||||| | |||| | | |||||||| |||||||||||||||||| |||| Sbjct 1109 ACTTAGCTGAATAAAATAGGCTTCGTGAAGCGAACCCGGCGAACTGAAACATCTCAGTAA 1168 Query 191 CTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 | | ||||||||| ||||||||||||||| |||||||||||||||| Sbjct 1169 CCGGAGGAAAAGACATCAACCGAGATTCCGTTAGTAGTGGCGAGCGAA 1216 >seq194978 Length=1758 Score = 102 bits (112), Expect = 1e-19 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 139 CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | |||||||| | | ||||||||||||||||||| ||| ||| Sbjct 687 CTGAATACATAGGAGGTTTCAAGCGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGG 628 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||| || ||||||||||| ||| |||||||||||||||| Sbjct 627 AAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGAA 587 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||||| | |||||| ||||||||| || |||||||||| | ||| Sbjct 881 GGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGGG 822 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| | ||||||||||||||||||||| Sbjct 821 GAG-CTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 775 >seq194357 Length=1599 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||||| | |||||| ||||||||| || |||||||||| | ||| Sbjct 877 GGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGGG 936 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| | ||||||||||||||||||||| Sbjct 937 GAG-CTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 983 Score = 102 bits (112), Expect = 1e-19 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTA-TGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 ||||||||||||| | |||||||| | | ||||||||||||||||||| ||| ||| Sbjct 1071 CTGAATACATAGGAGGTTTCAAGCGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGG 1130 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||| || ||||||||||| ||| |||||||||||||||| Sbjct 1131 AAAGGACATCAACCGAGACTCCGCTAGTAGTGGCGAGCGAA 1171 >seq121170 Length=1835 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||||| | |||||| ||||||||| || |||||||||| | ||| Sbjct 121 GGTGGATGCCTTGGCGATGAGAGGCGACGAAGGACGTGCTACGCTGCGATAAGCCGTGGG 62 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || || ||||||||| | ||||||||||||||||||||| Sbjct 61 GAG-CTGCGAAGGAGCTTTGATCCACGGATTTCCGAATGGGGAAACCC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916608348544