Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq194959 324 5e-86 seq115184 311 3e-82 seq52333 279 2e-72 seq123339 244 4e-62 seq149210 107 7e-21 >seq194959 Length=11641 Score = 324 bits (358), Expect = 5e-86 Identities = 413/565 (73%), Gaps = 23/565 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| ||||||||||| |||| | ||| ||| || |||| | | ||| || Sbjct 10954 TCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTCC 10895 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| || | ||||| | | |||||||||| ||||||||| | ||||||||| Sbjct 10894 GACCGTAACTAGCGTACCTTCGAACTCCTCCGTTACGCTTTGGGAGGAGA-CCGCCCCAG 10836 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TCCA 179 | ||||| || |||| ||||||||||| | |||||| |||| || |||||||| || | Sbjct 10835 TCAAACTGCCTACCATGCACTGTCCCCGATCCAGATAATGGACCTAGGTTAGAACCTCAA 10776 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || ||| ||||||||||||| | ||||| | |||||||| | | ||| || Sbjct 10775 ACACAC-CAGGGTGGTATTTCAACGTTGGCTCCATGAGAACTAGCGTCCTCACTTCAAAG 10717 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||||| | | | || ||||||| |||||| ||| ||||| | Sbjct 10716 CCTCCCACCTATCCTACACAGATCTGTTCAAAGTCCAATACAAAGCTACAGTAAAGGTTC 10657 Query 300 C-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||||| |||| | ||||| | | ||||| | || | | ||| ||| | Sbjct 10656 ATGGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCT 10597 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | || || ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 10596 GAGTCTCAGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 10537 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 10536 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTT 10477 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 |||| | | || ||| ||| ||| |||| ||||||||||| Sbjct 10476 CAATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGCACC 10436 Query 539 GGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||| || ||||| || Sbjct 10435 GGGCAGGCGTCACACCCTATACGTC 10411 >seq115184 Length=93111 Score = 311 bits (344), Expect = 3e-82 Identities = 414/568 (73%), Gaps = 29/568 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||| ||||||||| | ||| ||| || |||| | | |||| || Sbjct 65965 TCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTATCAAGACGATTTCC 66024 Query 61 AACCAGGCTG-AGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 ||| | || || | ||||| | | ||||||||||| ||| ||||| | |||||||| Sbjct 66025 GACC-GTCTCTAGCGTACCTTCGAACTCCTCCGTTACACTTTAGGAGGAGA-CCGCCCCA 66082 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||||||| |||| |||||| | || ||| | || || |||||||| || Sbjct 66083 GTCAAACTGCCCACCATGCACGGTCCCCGATCCCGATAAGGGACCTAGGTTAGAACCGCA 66142 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | ||| |||||||||||| | |||||||| || ||| ||| ||| | Sbjct 66143 AACAGACCAGGGTGGTATTTCAAGGATGACTCCACGCGATCTGGCGACCACGCTTCAACG 66202 Query 240 TCTCCCACCTATCCTACACAAACCG---CACCGAATGCCAATACCAAGCTATAGTGAAGG 296 |||||||||||||||||||| ||| ||| ||| ||||| | |||||| ||| |||| Sbjct 66203 TCTCCCACCTATCCTACACAGGCCGGTTCAC--AAT-CCAATGCAAAGCTACAGTAAAGG 66259 Query 297 TCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | ||||||||| |||| |||||| | | ||||| | || | ||| ||| Sbjct 66260 TTCATGGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAACCATGTCAACTTC 66319 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 | | | || || ||||||| || |||||||||||||||||||||||||||||| Sbjct 66320 GCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 66379 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 66380 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGG 66439 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| || | | || ||| ||| ||| ||||||||||| || Sbjct 66440 CTTCGATCAAGAG-CTTGCACCCCA----------TCA--------CTTAACCTTCCGGC 66480 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||| || ||||| || Sbjct 66481 ACCGGGCAGGCGTCACACCCTATACGTC 66508 >seq52333 Length=5662 Score = 279 bits (308), Expect = 2e-72 Identities = 328/436 (75%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||||||| |||||| |||| |||| ||||| ||| || ||| || | |||| || | Sbjct 2077 GACTTGTCAGTCTCACAGTTAAGCACCCTTATGCCTTTGCACACAATGCACGATTTCCGA 2136 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 || ||||||| ||||||| | |||||||||| |||| ||||| | |||||||||| Sbjct 2137 CCGTGCTGAGGATACCTTTGTACTCCTCCGTTACTTTTTTGGAGGAGA-CCGCCCCAGTC 2195 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGA--TATCCAC 180 |||||||| |||| ||||||| ||||||| ||| | | | ||||||||| | | || Sbjct 2196 AAACTACCTACCATACACTGTCTCCAACCCGGATAACGAGTTAAGGTTAGAACTTTAAAC 2255 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || | || |||||||||||| || | |||||| | |||||||| | || ||| || Sbjct 2256 -ACACT-AGGGTGGTATTTCAAGAATGGCTCCACTAAAACTAGCGT-TCAGCTTCAAAGC 2312 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG-TCC 299 ||||||||||| ||||||| | || || | ||||| |||| |||| || Sbjct 2313 CTCCCACCTATTCTACACAGGTATATTCAAAATTCAGTGTAAAGCTGTAGTAAAGGTTCA 2372 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| |||||| | | ||||||| || | | ||||||||| | Sbjct 2373 CGGGGTCTTTCCGTCTAGCCGCGGGTACGCTGCATCTTCACAGCGATTTCAATTTCACTG 2432 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 |||| ||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 2433 AGCCTTGGGTGGAGACAGCGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2492 Query 420 GACAAGGAATTTCGCT 435 |||||||||||||||| Sbjct 2493 GACAAGGAATTTCGCT 2508 >seq123339 Length=2740 Score = 244 bits (270), Expect = 4e-62 Identities = 323/440 (73%), Gaps = 10/440 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||| ||||||||| | ||| ||| || |||| | | |||| || Sbjct 1876 TCGACTTGTCAGTCTCACAGTCAAGCACGCTTATGCCATTGCACTATCAAGACGATTTCC 1817 Query 61 AACCAGGCTG-AGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 ||| | || || | ||||| | | ||||||||||| ||| ||||| | |||||||| Sbjct 1816 GACC-GTCTCTAGCGTACCTTCGAACTCCTCCGTTACACTTTAGGAGGAGA-CCGCCCCA 1759 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||||||| |||| |||||| | || ||| | || || |||||||| || Sbjct 1758 GTCAAACTGCCCACCATGCACGGTCCCCGATCCCGATAAGGGACCTAGGTTAGAACCGCA 1699 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | ||| |||||||||||| | |||||||| || ||| ||| ||| | Sbjct 1698 AACAGACCAGGGTGGTATTTCAAGGATGACTCCACGCGATCTGGCGACCACGCTTCAACG 1639 Query 240 TCTCCCACCTATCCTACACAAACCG---CACCGAATGCCAATACCAAGCTATAGTGAAGG 296 |||||||||||||||||||| ||| ||| ||| ||||| | |||||| ||| |||| Sbjct 1638 TCTCCCACCTATCCTACACAGGCCGGTTCAC--AAT-CCAATGCAAAGCTACAGTAAAGG 1582 Query 297 TCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTC 355 | | ||||||||| |||| |||||| | | ||||| | || | ||| ||| Sbjct 1581 TTCATGGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAACCATGTCAACTTC 1522 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 | | | || || ||||||| || |||||||||||||||||||||||||||||| Sbjct 1521 GCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 1462 Query 416 ACCCGACAAGGAATTTCGCT 435 |||||||||||||||||||| Sbjct 1461 ACCCGACAAGGAATTTCGCT 1442 Score = 158 bits (174), Expect = 4e-36 Identities = 141/178 (79%), Gaps = 19/178 (11%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1219 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| ||||||||||| |||||||| || | | || ||| ||| Sbjct 1218 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG-CTTGCACCCCA----- 1165 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||| ||||||||||| ||||||||||||||||| || ||||| || Sbjct 1164 -----TCA--------CTTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 1120 >seq149210 Length=2481 Score = 107 bits (118), Expect = 7e-21 Identities = 113/150 (75%), Gaps = 19/150 (13%) Strand=Plus/Minus Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 2481 TTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGG 2422 Query 474 GGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCA 533 |||||| || | | || ||| ||| ||| ||||||||||| Sbjct 2421 GGCTTCGATCAAGAG-CTTGCACCCCA----------TCA--------CTTAACCTTCCG 2381 Query 534 GCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||||| || ||||| || Sbjct 2380 GCACCGGGCAGGCGTCACACCCTATACGTC 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1699078889984