Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq194959 205 2e-50 seq115184 174 3e-41 seq127244 141 2e-31 >seq194959 Length=11641 Score = 205 bits (226), Expect = 2e-50 Identities = 218/285 (76%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACG- 59 ||||||||||||| ||||||||| ||||||||| || ||||| || | ||| | Sbjct 6970 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCGTCATGGACCCCCTTTA 6911 Query 60 -TGGAAGG----TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | ||||| |||| | || || ||||| ||||||||| ||| || |||||||||| Sbjct 6910 TTAGAAGGAGTCTTTTCGTTCCGTACAAAAGCAGTTTACAACCCGAAGG-CCTTCATCCT 6852 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 ||||| | ||||||| |||| || || |||||| |||| ||||| |||||||||||| Sbjct 6851 GCACGCGGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAAAATTCCCCACTGCTGCCTC 6792 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | || Sbjct 6791 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCT 6732 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| |||| ||| || ||| ||| || |||||||||| Sbjct 6731 ACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAAT 6687 >seq115184 Length=93111 Score = 174 bits (192), Expect = 3e-41 Identities = 212/285 (74%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA--AGC-TCCCACA 57 ||||||||||||| ||||||||| ||||||||| || ||| || || |||| | Sbjct 69956 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTGCAGATACCGTCAGCAGTATCCCGTA 70015 Query 58 CGTGGA---AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 ||| | |||| ||| || ||||| | ||||||| ||| || |||||||| | Sbjct 70016 TTAGGAGATACCTTTTCTTCTCTGCCAAAAGTACTTTACAACCCGAAGG-CCTTCATCAT 70074 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 ||||| ||||||| |||| | || |||||| |||| ||||| |||||||||||| Sbjct 70075 ACACGCGGGATGGCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCTC 70134 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| ||| |||||||||||| ||| ||||| | | |||||||| | | || Sbjct 70135 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAAACCAGCT 70194 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| | || |||| ||| ||||||| || |||| ||||| Sbjct 70195 ACGGATCGTTGCCTTGGTGAGCCTTTACCCCACCAACTAGCTAAT 70239 >seq127244 Length=4668 Score = 141 bits (156), Expect = 2e-31 Identities = 158/210 (75%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||| ||| || ||||| || ||||| | | ||||| |||| | || |||| Sbjct 26 TTTACAACCCGAAGG-CCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTTCCCCCAT 84 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 85 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 144 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | ||| || || | || ||| ||| |||||| || Sbjct 145 TGGCTGATCGTCCTCTCAGACCAGCTACGGATTGTTGCCTTGGTAGGCTATTACCCTACC 204 Query 269 TACTACCTAATGGAACGCATCCCCATCGTA 298 |||| ||||| ||||| | |||| || Sbjct 205 AACTAGCTAATCCGACGCAGGCTCATCTTA 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066714942208