Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq124163 122 2e-23 >seq124163 Length=12495 Score = 122 bits (134), Expect = 2e-23 Identities = 342/525 (65%), Gaps = 0/525 (0%) Strand=Plus/Minus Query 37773 GATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTT 37832 ||||||| | || ||||| || ||| | ||| | | | ||||||||| || | | Sbjct 5359 GATTTCCTTTAGTCACAACTAAGAAAATCCATCTAAAAAGCCTTATTTATGAATTGTTAT 5300 Query 37833 GGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGG 37892 ||||||||||||||||||| || | | ||||| | || |||| || || || |||| Sbjct 5299 GGTTTTTAAAAGGCGATACTAATATTCAATATTTAAATGATCATGGTGTTACTATATGGG 5240 Query 37893 ATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCGT 37952 |||| ||||| || ||| | || || | || || ||||| || ||||||||| | Sbjct 5239 ATGAATGGGCAGATGAACATGGAGAATTAGGACCCATTTATGGAAAGCAATGGCGTCATT 5180 Query 37953 GGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAAC 38012 || || | | || || | |||||| || || | | | | || || ||| Sbjct 5179 GGCAGTGTGTTGATGGCCGGATCATCGATCAAATAGACCGACTCCTTGAGACTATAAAAA 5120 Query 38013 GAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAGA 38072 ||||| ||||||| || || | || || ||||||||||||| ||||| | | | Sbjct 5119 CTAATCCTGATTCACGACGATTGATTGTAAGTGCTTGGAATGTAGGGGAATTAAATCAAA 5060 Query 38073 TGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGTCAT 38132 || ||||||| ||||||| ||||| || || | | | | | || | Sbjct 5059 TGGCCTTGCCGCCATGTCATTTACTGTTTCAATTTTACATAGTTGATAGAACAATTTCCT 5000 Query 38133 GCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCT 38192 | | | | || || || | ||| | |||||||| | || ||||| || || | Sbjct 4999 GTAAATTGACCCAACGGTCAGCAGATGCTTTTTTAGGTGTACCTTTTAATATTGCTTCTT 4940 Query 38193 ACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCATTT 38252 | || | || ||||||||||| || | ||||| || || | || || ||| | |||| Sbjct 4939 ATGCTTTATTAACGCATATGGTGGCTGAGCAATGTGATTTAAAGGTAGGAGAATTTATTT 4880 Query 38253 TCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAG 38297 | || ||||| ||| | ||||| |||||| |||| |||| Sbjct 4879 GGTCGGGAGGCGATTGTCATATTTACAATAATCATTTGGAGCAAG 4835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130337356436600