Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq188574 122 7e-23 seq70405 122 7e-23 seq171013 95.1 1e-14 >seq188574 Length=9004 Score = 122 bits (134), Expect = 7e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || |||||| |||| || ||||| | | ||||||||||| || ||||| ||||| Sbjct 8554 TACCTCGTCCGGAGATGTGTACTCCGCCACCTCGGTGCACAGGTTGCTGCACTTGATGGT 8613 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||| | || | |||||| |||||||||||| ||||||||||||| |||||| || || Sbjct 8614 GCCAAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGT 8673 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| ||||||| || ||||||| |||||| Sbjct 8674 GCCCGTCTCAATCTGAGACTCAAGGATGGC 8703 >seq70405 Length=8866 Score = 122 bits (134), Expect = 7e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || |||||| |||| || ||||| || | ||||||||||| || ||||| ||||| Sbjct 3235 TACCTCGTCCGGAGATGTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGT 3176 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||| | || | |||||| |||||||||||| ||||||||||||| |||||| || || Sbjct 3175 GCCAAGGTTTTTCTGATTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGT 3116 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| || |||| || ||||||| |||||| Sbjct 3115 GCCCGTTTCAATCTGAGACTCAAGGATGGC 3086 >seq171013 Length=8497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 8/158 (5%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || |||||| |||| || ||||| || | ||||||||||| || ||||| ||||| Sbjct 3512 TACCTCGTCCGGAGATGTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGT 3453 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGA-TTGCATG-------CATCCTTGTACATCATG 66145 ||| | || | |||||| ||||||| |||| | |||| ||||||| |||| Sbjct 3452 GCCAAGGTTTTTCTGATTAGACTTGCGAGTTGCCAGAGCGGCCCATCTTTGTACAGCATG 3393 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 || || ||||| ||||||| || ||||||| |||||| Sbjct 3392 TATGGTGTGCCCGTCTCAATCTGAGACTCAAGGATGGC 3355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396622747789760