Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq115183 167 4e-36 >seq115183 Length=152922 Score = 167 bits (184), Expect = 4e-36 Identities = 211/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCG 196840 ||||| ||||| || ||||| ||||| ||||| ||||| || || || ||||| ||||| Sbjct 137657 TCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATCGCC 137598 Query 196841 TCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTTC 196900 ||||| ||||||| ||||||| ||||||| || | | ||| | ||| || ||| Sbjct 137597 AGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATCTGGAAGTGGGTGATTTC 137538 Query 196901 GTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACAG 196960 | |||||||| |||||| ||| | |||||||| ||| | ||||| | ||| |||| Sbjct 137537 ATCTGGACTGGTGGTGACTGTCACCTGTACTCCAACCACTTCGAACAAGCAGAGCTACAG 137478 Query 196961 CTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTATC 197020 || || || | || | | || | |||| ||||| |||||||| | |||| | Sbjct 137477 CTCTCGCGCGAGCCTCGCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGCCAGTCTG 137418 Query 197021 TTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCC 197070 ||||||||| | | ||||||||||||| | | ||||||||| ||||| Sbjct 137417 TTCGATTACGAGTACGAAGACTTCGAAATCACCGACTACGATCCTCATCC 137368 Score = 93.3 bits (102), Expect = 6e-14 Identities = 171/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 196117 CAAAGCTGACCGTACCGGCACAGGCACTACGTCC-TATCTCGGCGCACAGATGCGCTTCG 196175 ||||| ||||| |||||||| ||||| | || ||| | | | | || |||||||||| Sbjct 138084 CAAAGGGGACCGCACCGGCACCGGCACGAACTCGGTATTTGGCCAC-CAAATGCGCTTCG 138026 Query 196176 ATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTC 196235 ||||| | || ||||||||| ||||||| |||||||| ||| || |||| || Sbjct 138025 ATCTGTCGCAGGGTTTCCCGCTGATCACCACCAAGAAACTGCATACCCGCAGCATCTTTA 137966 Query 196236 ATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTG 196295 ||| |||||||||| | || || |||| | | ||| | || ||| | Sbjct 137965 TTGAGTTGCTGTGGTTTTTGCGTGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCG 137906 Query 196296 TCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGC 196355 | | |||||| |||| ||||| || | ||| || ||||| ||||| || ||| || Sbjct 137905 TAACCATCTGGGACGAATGGGCCGACAAGGACGGCAATCTGGGCCCGGTCTATGGTGTGC 137846 Query 196356 AGTGGCGT 196363 | |||||| Sbjct 137845 AATGGCGT 137838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769660955280480