Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq149210 87.8 2e-12 seq115184 87.8 2e-12 seq194959 86.0 9e-12 >seq149210 Length=2481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 156 TCGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGA 215 Query 142851 GTCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 216 TCCCGTCATCCTCCACCA 233 >seq115184 Length=93111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 |||||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 68765 TCGGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGA 68706 Query 142851 GTCCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 68705 TCCCGTCATCCTCCACCA 68688 >seq194959 Length=11641 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 8143 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 8202 Query 142853 CCGTTATTCTCCACCAACCA 142872 |||| || |||||||| ||| Sbjct 8203 CCGTCATCCTCCACCACCCA 8222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689773042167840