Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_032938.1 Length=5595 Score E Sequences producing significant alignments: (Bits) Value seq6065 196 2e-46 seq20880 194 6e-46 seq24207 188 3e-44 >seq6065 Length=163279 Score = 196 bits (216), Expect = 2e-46 Identities = 556/838 (66%), Gaps = 24/838 (3%) Strand=Plus/Minus Query 3793 GCGTTCAGGACCAAGACCACTGCTGGCATCTCTTCCCTGCTTTTCGGGGAGCTTGAAGAC 3852 || || ||||||||||||| || || | ||| || || | || || || | || || Sbjct 33535 GCTTTTAGGACCAAGACCATCGCCGGGGTGTCTGCCTTGATGTTTGGAGACATCGAGGAG 33476 Query 3853 TTTTTTAAACCAAACAACGTCTGTCACGCGGCATTGAAGGAGGWGGCCAAAACTCGCATT 3912 || | || || || ||||||||||| || ||||||||| || ||||| | || Sbjct 33475 CTTCTCAAGCCCTCGAATGTCTGTCACGCTGCCCTGAAGGAGGAAGCAAAAACCAGAATA 33416 Query 3913 ATCGTCTCTACTCCTATGCACTCCTATGTGGCCATGTGTTTCGTGTTCGACCTCCTTGGG 3972 ||| |||| || || |||||||| ||||| | | ||| || || | ||||| |||||| Sbjct 33415 ATCATCTCCACACCCATGCACTCATATGTTGGGACGTGCTTTGTCCTTGACCTTCTTGGG 33356 Query 3973 CCGCCACATTTTCTTAAGAGTACTATCGCCTCATCTCGGGGCCTGGAAGAGTTTGCTCG- 4031 || || | || || || || || ||| | | | | | ||| |||| |||| Sbjct 33355 CCCCCTCGCTTCCTCAACAGCACGATCTCGAAACCAACGCTCATGGCCAAGTT--CTCGA 33298 Query 4032 -GTATCGGGCAAAGTATTACGCGGCAATAGATGCTTCCAAGTTCGACCATAATGTCCCTC 4090 |||| | | ||| | || || || || ||| ||||| || || |||||| Sbjct 33297 CGTATTACTCCCGCCACTACTCTGCCATCGACGCATCCCGCTTCGATCACAACGTCCCTA 33238 Query 4091 GCTGGTTGCTGGAGATGATATGGGATGAACTTGCTCTCGCACTG--GAATC-CAGGTGCG 4147 ||||||||| ||||||||| || || |||| | ||| ||| | ||| | Sbjct 33237 AGTGGTTGCTGCGTATGATATGGACTGTCCTGGCTCGCTGTCTGCGGAAACGCAGATTT- 33179 Query 4148 ACGAAAGATTCACGACGGCGTC--CCATTTGTGCAGGTCACTGTCTTCCGAACTGCGGAA 4205 || | | || |||| || | ||||||||| || | || | ||||| | || Sbjct 33178 -CGGGATTTCCAGGACG-CGGCAACCATTTGTGATGGGCT-TG-CGTCCGAGTTAGACAA 33123 Query 4206 TTTAGTGGTGGAAATTTTGGGGACACACCTGCGCTATGAAAAAGGGCTGCTCAGCGGATG 4265 | | ||||| || ||||||| ||||| | | || || || ||| | || || || Sbjct 33122 TCTGGTGGTTGAGGTTTTGGGAGCACACATCCCATACAGTAAGGGACTGATGAGTGGGTG 33063 Query 4266 GCGTGCGACTTCCTTCATTGGGTCGCTAGTCTCCGCTCTCTGTTGTGAGTCGTATGTAGA 4325 | | | || || ||| | |||||| | ||||||| | || ||||| |||| | | Sbjct 33062 GAGGTCAACGTCTTTCGTGGGGTCGTTGATCTCCGCGTTGTGCTGTGAACACTATGCACA 33003 Query 4326 GCATCATGCCTCGGCTTC--CAGGTCC-GAGTATAGG--CATTGGATTGACTACCTTGTA 4380 | ||| | | | | | |||| ||||| | || ||| || ||| | || Sbjct 33002 AGA-CATACGTTTGAGGCAGCTGGTCAAGAGTAGCGCGTCAATGG---GA-TACATCGTG 32948 Query 4381 CAGGGTGATGATATCATACTCTTTTCATCTGCGTATGATTTGTCTGACTCCGTAGACTAC 4440 || || |||| ||| || || | || || | | || | |||||||| ||||| | Sbjct 32947 CAAGGCGATGGTATTATCCTTTACTCTTCATCCCACGACCTTGCTGACTCCATAGACCAT 32888 Query 4441 ATGAGGGGTCTCGGGGTCCTCACTCACCCATCTAAGTGCCTCATTGGTGCCGATGGGGAT 4500 |||||||||||||| ||| | ||||| ||| || |||||||| ||| ||||||||| Sbjct 32887 ATGAGGGGTCTCGGAGTCATAACTCATAAATCCAAATGCCTCATAGGTAGTGATGGGGAT 32828 Query 4501 TTCCTTCGAGCCATTTACACCAAGGATGGGCGTAAGACGTATCCCATGCGTGCCCTTCGG 4560 |||||||| || |||||||| || ||||| || |||||||||||| | | | || Sbjct 32827 TTCCTTCGGGCGATTTACACGCCTGAGGGGCGGAAAACGTATCCCATGAGAAGCTTGAGG 32768 Query 4561 AGCATTTTTTATGCCAATCCTTGGGTGGAGCAGAGGGCGTTCAAAGGAGTGGTCGAGA 4618 ||||| || || |||||||||||| | || || |||| || || || |||| |||| Sbjct 32767 AGCATATTCTACGCCAATCCTTGGATTGAACAAAGGGTATTTAAGGGGTTGGTTGAGA 32710 Score = 105 bits (116), Expect = 2e-19 Identities = 192/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 2977 TGGGCAGGCCCTAGGCCCACAGCAAAACTAGGGCACTTCG-GAGGGGGAAGAGTGGACGG 3035 ||||| ||||| ||||||| || |||| ||||| |||| || | ||| ||| | | Sbjct 34343 TGGGCCGGCCCGAGGCCCAGAGACCAACTCGGGCATTTCGTGAACGAAAAG-GTGAAGGA 34285 Query 3036 CAAGCTCACACTTGACTGGGCGTGGGTCTCGGGTTTCGAATTCCTTCC-GGCAGGTACTG 3094 ||||||||| || |||||| | |||||| ||| | | ||| | |||||| || | Sbjct 34284 CAAGCTCACCCTGGACTGGTCTTGGGTCGGGGGCGT-GCATTGGGACGAGGCAGGCACGG 34226 Query 3095 CGTTGCGCA-CGCTCCTAAAAGGGTGCGATGTAGCGCGCAACTTCGCCAGGCTGGAGGGT 3153 | ||||| ||| || | | |||||| |||||| ||||| ||| ||||| ||| Sbjct 34225 CAGTGCGCCGCGCGTTTACAGGCGTGCGA-GTAGCGACCAACTACGCTAGGCTCGAGTCC 34167 Query 3154 CTCCGACGCTCGAGGTACACGTCGGTTAAGCACACCCAACAACTTGTGACGTGGGCTGGT 3213 ||||| |||||| |||||| || ||| | || |||| || |||||||||| Sbjct 34166 CTCCGCCGCTCGCGGTACATTTCCACGTCCCACCACAAAAAACTGGTAGGGTGGGCTGGT 34107 Query 3214 TCGTTCGCGGGGCCCCTCGCGTTCCTCCTCGAC 3246 || ||| | ||||||||| | ||| | || ||| Sbjct 34106 TCCTTCACCGGGCCCCTCTCCTTCTTGCTTGAC 34074 >seq20880 Length=23064 Score = 194 bits (214), Expect = 6e-46 Identities = 671/1030 (65%), Gaps = 27/1030 (3%) Strand=Plus/Minus Query 3793 GCGTTCAGGACCAAGACCACTGCTGGCATCTCTTCCCTGCTTTTCGGGGAGCTTGAAGA- 3851 || ||| |||||||||||| || ||| ||||| | ||| | || || || | || || Sbjct 8681 GCCTTCTGGACCAAGACCATCGCGGGCGTCTCTGCTCTGATGTTTGGTGACATGGAGGAG 8622 Query 3852 CTTTTTTAAACCAAACAACGTCTGTCACGCGGCATTGAAGGAGGWGGCCAAAACTCGCAT 3911 ||| | | || | || | |||||||| | | ||||||| ||| ||||| || | Sbjct 8621 CTTCTCTGGCCCTCA-AATATATGTCACGCTGTGCTAAAGGAGGAGGCAAAAACCCGGGT 8563 Query 3912 TATCGTCTCTACTCCTATGCACTCCTATGTGGCCATGTGTTTCGTGTTCGACCTCCTTGG 3971 || | | || || ||||| || || || | | ||||||||| | ||||| || || Sbjct 8562 CATAATATGGACCCCCATGCATTCGTACGTTGGTACGTGTTTCGTCCTGGACCTGCTGGG 8503 Query 3972 GCCGCCACATTTTCTTAAGAGTACTATCGCCTCATCTCGGGGCCTGGAAGA-GTTTGCTC 4030 ||| || | ||||| || || || ||| || | || | | ||| | ||| || Sbjct 8502 GCCCCCTCGCTTTCTCAACAGCACGATCTCCCAACCTTCGCTCATGGCCAATGTTCTCTA 8443 Query 4031 GGTATCGGGCAAAGTATTACGCGGCAATAGATGCTTCCAAGTTCGACCATAATGTCCCTC 4090 ||| | | || || | || || ||||| ||| || || || ||||||||| Sbjct 8442 CGTACTACTCCCACTACTATTCAGCGATCGATGCCTCCCGATTTGATCACAATGTCCCTA 8383 Query 4091 GCTGGTTGCTGGAGATGATATGGGATGAACTTGCTCTCGCACTGGAATC-CAGGTGCGAC 4149 ||| ||||| ||||||||||||| | ||||| |||||| | || | || | Sbjct 8382 AATGGCTGCTGCAGATGATATGGGAAGTGCTTGC----GCACTGTTTGCGCAAGCGCAAA 8327 Query 4150 GAAAGA----TTCACGACG--GCGTCCCATTTGTGCAGGTCACTGTCTTCCGAACTGCGG 4203 ||| |||| ||| ||| || ||| ||| || | || || || ||| Sbjct 8326 CTCAGAGATTTTCAAGACACAGCGGCCAATT-GTGATGG--ATTGGTGTCTGAGCTGGAT 8270 Query 4204 AATTTAGTGGTGGAAATTTTGGGGACACACCTGCGCTATGAAAAAGGGCTGCTCAGCGGA 4263 || ||||| || | ||||| ||||| | | || || | ||||| ||||| Sbjct 8269 GGGTTGGTGGTTGAGGTGTTGGGTGCACACATCCCATACAGCAAGGTACTGCTGAGCGGG 8210 Query 4264 TGGCGTGCGACTTCCTTCATTGGGTCGCTAGTCTCCGCTCTCTGTTGTGAGTCGTATGTA 4323 ||| | |||| || ||| | |||||| | ||||||| || ||||| || || | Sbjct 8209 TGGAGGTCGACGTCATTCGTGGGGTCGTTGATCTCCGCACTGTGTTGCGAACATTACACA 8150 Query 4324 GAGCATCATGCCTCG-GCTTCCAGGTCCGAGTATAG-GCATTGGATTGACTACCTTGTAC 4381 || || | ||| | | |||| || | | || | | || ||| | || | Sbjct 8149 CAGAATGTTAGGTCGAGAGGACTGGTCA-AGAGTCGTGCGTCCGTAGGA-TACATCGTGC 8092 Query 4382 AGGGTGATGATATCATACTCTTTTCATCTGCGTATGATTTGTCTGACTCCGTAGACTACA 4441 | || ||||| || || || | |||||| | | || | |||||||| |||| || | Sbjct 8091 AAGGCGATGACATTATCCTATATTCATCCACTCACGACCTTGCTGACTCCATAGATTATA 8032 Query 4442 TGAGGGGTCTCGGGGTCCTCACTCACCCATCTAAGTGCCTCATTGGTGCCGATGGGGATT 4501 |||||| ||| || ||| | || || || || |||||||| ||| ||||| |||| Sbjct 8031 TGAGGGATCTTGGAGTCATAACACATAAGTCGAAATGCCTCATAGGTAGTGATGGTGATT 7972 Query 4502 TCCTTCGAGCCATTTACACCAAGGATGGGCGTAAGACGTATCCCATGCGTGCCCTTCGGA 4561 ||||||| || |||||||| || || || ||||| ||||||| ||| | | Sbjct 7971 TCCTTCGGGCTATTTACACGCCCGAGGGAAAGAAAACGTACTCCATGCGAAGCCTGAGAA 7912 Query 4562 GCATTTTTTATGCCAATCCTTGGGTGGAGCAGAGGGCGTTCAAAGGAGTGGTCGAGATCA 4621 |||||||| || ||||| ||| | ||||| |||| ||||| || | || ||||| Sbjct 7911 ATATTTTTTACGCTAATCCGTGGATAGAGCAACGGGCATTCAAGGGGCTAGTGGAGATAT 7852 Query 4622 GCCAGAATTGGCTGGTCGTCGAAAGCAGGTTCTCTCTCCTGTGTACAACATCTGATGTC- 4680 | |||||| || |||| || |||||||| || || || || | | |||| ||| Sbjct 7851 CTGAAAATTGGTTGATCGTTGAGAGCAGGTTTTCCCTGCT-TGGCC--CGACTGACGTCG 7795 Query 4681 --GAACGGGCAGTCCGGTCCGCTGCTTGTGCTGACATAGCGCGGTGGTCCGGCGGATCCC 4738 || ||| ||||| | ||| || || ||||||||| ||||||| || || | | Sbjct 7794 GAGAGCGGTTCATCCGGCGCTGTGCCTGCGCCGACATAGCGAGGTGGTCTGGAGGTGCAC 7735 Query 4739 TTCGTGCGTCGCAGGTCCGTGCACTGTATAATACTCCCCTTAGTGTGGGGGGCCTTGGGC 4798 || | | |||||||||| ||| |||||||||| || | | || || |||||| Sbjct 7734 TTAAGAAGGCACAGGTCCGTGACCTGAATAATACTCCACTGTCTATCGGTGGTATTGGGC 7675 Query 4799 CCGTTGAGTC 4808 | | ||||| Sbjct 7674 CTCTGGAGTC 7665 >seq24207 Length=111494 Score = 188 bits (208), Expect = 3e-44 Identities = 670/1030 (65%), Gaps = 27/1030 (3%) Strand=Plus/Plus Query 3793 GCGTTCAGGACCAAGACCACTGCTGGCATCTCTTCCCTGCTTTTCGGGGAGCTTGAAGA- 3851 || ||| |||||||||||| || ||| ||||| | ||| | || || || | || || Sbjct 95768 GCCTTCTGGACCAAGACCATCGCGGGCGTCTCTGCTCTGATGTTTGGTGACATGGAGGAG 95827 Query 3852 CTTTTTTAAACCAAACAACGTCTGTCACGCGGCATTGAAGGAGGWGGCCAAAACTCGCAT 3911 ||| | | || | || | |||||||| | | ||||||| ||| ||||| || | Sbjct 95828 CTTCTCTGGCCCTCA-AATATATGTCACGCTGTGCTAAAGGAGGAGGCAAAAACCCGGGT 95886 Query 3912 TATCGTCTCTACTCCTATGCACTCCTATGTGGCCATGTGTTTCGTGTTCGACCTCCTTGG 3971 || | | || || ||||| || || || | | ||||||||| ||||||| || || Sbjct 95887 CATAATATGGACCCCCATGCATTCGTACGTTGGTACGTGTTTCGTCCTCGACCTGCTGGG 95946 Query 3972 GCCGCCACATTTTCTTAAGAGTACTATCGCCTCATCTCGGGGCCTGGAAGA-GTTTGCTC 4030 ||| || | ||||| || || || ||| || | || | | ||| | ||| || Sbjct 95947 GCCCCCTCGCTTTCTCAACAGCACGATCTCCCAACCTTCGCTCATGGCCAATGTTCTCTA 96006 Query 4031 GGTATCGGGCAAAGTATTACGCGGCAATAGATGCTTCCAAGTTCGACCATAATGTCCCTC 4090 ||| | | || || | || || ||||| ||| || || || ||||||||| Sbjct 96007 CGTACTACTCCCACTACTATTCAGCGATCGATGCCTCCCGATTTGATCACAATGTCCCTA 96066 Query 4091 GCTGGTTGCTGGAGATGATATGGGATGAACTTGCTCTCGCACTGGAATC-CAGGTGCGAC 4149 ||| ||||| |||||||||||| | ||||| || ||| | || | || | Sbjct 96067 AATGGCTGCTGCGGATGATATGGGAAGTGCTTGC----GCGCTGTTTGCGCAAGCGCAAA 96122 Query 4150 GAAAGA----TTCACGACG--GCGTCCCATTTGTGCAGGTCACTGTCTTCCGAACTGCGG 4203 ||| |||| ||| ||| || ||| ||| || | || || || ||| Sbjct 96123 CTCAGAGATTTTCAAGACACAGCGGCCAATT-GTGATGG--ATTGGTGTCTGAGCTGGAT 96179 Query 4204 AATTTAGTGGTGGAAATTTTGGGGACACACCTGCGCTATGAAAAAGGGCTGCTCAGCGGA 4263 || ||||| || | ||||| ||||| | | || || | ||| | ||||| Sbjct 96180 GGGTTGGTGGTTGAGGTGTTGGGTGCACACATCCCATACAGCAAGGTACTGTTGAGCGGG 96239 Query 4264 TGGCGTGCGACTTCCTTCATTGGGTCGCTAGTCTCCGCTCTCTGTTGTGAGTCGTATGTA 4323 ||| | |||| || ||| | |||||| | ||||||| || ||||| || || | Sbjct 96240 TGGAGGTCGACGTCATTCGTGGGGTCGTTGATCTCCGCACTGTGTTGCGAACGTTACACA 96299 Query 4324 GAGCATCATGCCTCG-GCTTCCAGGTCCGAGTATAG-GCATTGGATTGACTACCTTGTAC 4381 || || | ||| | | |||| || | | || | | || ||| | || | Sbjct 96300 CAGAATGTTAGGTCGAGAGGACTGGTCA-AGAGTCGTGCGTCCGTAGGA-TACATCGTGC 96357 Query 4382 AGGGTGATGATATCATACTCTTTTCATCTGCGTATGATTTGTCTGACTCCGTAGACTACA 4441 | || ||||| || || || | |||||| | | || | |||||||| |||| || | Sbjct 96358 AAGGCGATGACATTATCCTATATTCATCCACTCACGACCTTGCTGACTCCATAGATTATA 96417 Query 4442 TGAGGGGTCTCGGGGTCCTCACTCACCCATCTAAGTGCCTCATTGGTGCCGATGGGGATT 4501 |||||| ||| || ||| | || || || || |||||||| ||| ||||| |||| Sbjct 96418 TGAGGGATCTTGGAGTCGTAACACATAAGTCGAAATGCCTCATAGGTAGTGATGGTGATT 96477 Query 4502 TCCTTCGAGCCATTTACACCAAGGATGGGCGTAAGACGTATCCCATGCGTGCCCTTCGGA 4561 ||||||| || |||||||| || || || ||||| |||||||| ||| | | Sbjct 96478 TCCTTCGGGCTATTTACACGCCCGAGGGAAAGAAAACGTACCCCATGCGAAGCCTGAGAA 96537 Query 4562 GCATTTTTTATGCCAATCCTTGGGTGGAGCAGAGGGCGTTCAAAGGAGTGGTCGAGATCA 4621 |||||||| || ||||| ||| | ||||| |||| ||||| || | || ||||| Sbjct 96538 ATATTTTTTACGCTAATCCGTGGATAGAGCAACGGGCATTCAAGGGGCTAGTGGAGATAT 96597 Query 4622 GCCAGAATTGGCTGGTCGTCGAAAGCAGGTTCTCTCTCCTGTGTACAACATCTGATGTC- 4680 | |||||| || |||| || |||||||| || || || || | | |||| ||| Sbjct 96598 CTGAAAATTGGTTGATCGTTGAGAGCAGGTTTTCCCTGCT-TGGCC--CGACTGACGTCG 96654 Query 4681 --GAACGGGCAGTCCGGTCCGCTGCTTGTGCTGACATAGCGCGGTGGTCCGGCGGATCCC 4738 || ||| ||||| ||| || || ||||||||| ||||||| || || | | Sbjct 96655 GAGAGCGGTTCATCCGGCGTTGTGCCTGCGCCGACATAGCGAGGTGGTCTGGAGGTGCAC 96714 Query 4739 TTCGTGCGTCGCAGGTCCGTGCACTGTATAATACTCCCCTTAGTGTGGGGGGCCTTGGGC 4798 || | | |||||||||| |||||||||||||| || | | || || |||||| Sbjct 96715 TTAAGAAGGCACAGGTCCGTGACCTGTATAATACTCCACTGTCTATCGGTGGTATTGGGC 96774 Query 4799 CCGTTGAGTC 4808 | | ||||| Sbjct 96775 CTCTGGAGTC 96784 Score = 96.9 bits (106), Expect = 1e-16 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 4537 ACGTATCCCATGCGTGCCCTTCGGAGCATTTTTTATGCCAATCCTTGGGTGGAGCAGAGG 4596 ||||| |||||||| ||| | || |||||||| || ||| ||| | |||| || Sbjct 105346 ACGTACCCCATGCGAAGCCTGAGAAGTATTTTTTACGCTAATTTGTGGATAAAGCAACGG 105405 Query 4597 GCGTTCAAAGGAGTGGTCGAGATCAGCCAGAATTGGCTGGTCGTCGAAAGCAGGTTCTCT 4656 || ||||| || | || ||||| || ||||| || |||| || |||||||| || Sbjct 105406 GCATTCAAGGGGCTAGTGGAGATATCTCAAAATTGATTGATCGTTGAGAGCAGGTTTTCC 105465 Query 4657 CTCCTGTGTACAACATCTGATGTCGAA---CGGGCAGTCCGGTCCGCTGCTTGTGCTGAC 4713 || || | | || ||| |||| | ||| ||||| | ||| || || ||| Sbjct 105466 CTGCTTGGCCCGAC---TGACGTCGGAGAGCGGTTCATCCGGCGCTGTGCCTGCGCCGAC 105522 Query 4714 ATAGCGCGGTGGTCCGGCGGATCCCTTCGTGCGTCGCAGGTCCGTGCACTGTATAATACT 4773 |||| | ||||||| || || | ||| ||| | |||||||||| |||||||||||| Sbjct 105523 ATAGTGAGGTGGTCTGGAGGTGCACTTAAGGCGGCACAGGTCCGTGACCTGTATAATACT 105582 Query 4774 CCCCT 4778 || || Sbjct 105583 CCACT 105587 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17754036653600