Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3051 145 1e-32 seq3566 143 5e-32 seq1772 127 4e-27 >seq3051 Length=10318 Score = 145 bits (160), Expect = 1e-32 Identities = 192/262 (73%), Gaps = 11/262 (4%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCTCGA 118 |||| || || |||||||| ||||||||||| | ||||||||| | ||| || Sbjct 10124 GCCAACACGTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGAAATATCTGCCTGA 10065 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||| ||||||||| ||| || ||||| | |||||||||||||||||||| ||||| Sbjct 10064 ATAGTGGTGCATGGAATGATAAAACAGGACCT-CGGTTCTATTTTGTTGGTTT-TAGGAA 10007 Query 179 C--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 | |||||||| ||| ||| | |||||| | ||||| || ||||||||| Sbjct 10006 TATGAGGTAATGATCAATGTGGACTGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAA 9947 Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 |||||||||| ||||| |||| |||||||| || ||||| |||| || ||| Sbjct 9946 ATTCTTGGATCGTCGCAAGACGCACTAGAGCGAAAGCATTTGCCAAGTATGTCTTAATTG 9887 Query 297 ATCAGTGAACGAAAGTTAGGGG 318 |||| ||||||||||||| || Sbjct 9886 ATCA-AGAACGAAAGTTAGAGG 9866 Score = 86.0 bits (94), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 10/147 (7%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------CTTTGCTCGAATACAT 124 || || |||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 10174 ACGTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGAAATATCTGCCTGAATAGTG 10233 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--CCGCC 182 ||||||||| ||| || ||||| | |||||||||||||||||||| ||||| | Sbjct 10234 GTGCATGGAATGATAAAACAGGACCT-CGGTTCTATTTTGTTGGTTT-TAGGAATATGAG 10291 Query 183 GTAATGATTAATAGGGATAGTCGGGGG 209 |||||||| ||| ||| | |||||| Sbjct 10292 GTAATGATCAATGTGGACTGGCGGGGG 10318 >seq3566 Length=7760 Score = 143 bits (158), Expect = 5e-32 Identities = 188/256 (73%), Gaps = 11/256 (4%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC------TTTGCTCGAATACAT 124 || || |||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 6320 ACGTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGAAATATCTGCCTGAATAGTG 6261 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCC 182 ||||||||| ||| || ||||| | |||||||||||||||||||| ||||| | Sbjct 6260 GTGCATGGAATGATAAAACAGGACCT-CGGTTCTATTTTGTTGGTTT-TAGGAATATGAG 6203 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||||||| ||| ||| | |||||| | ||||| || ||||||||||||||| Sbjct 6202 GTAATGATCAATGTGGACTGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTT 6143 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| |||| |||||||| || ||||| |||| || ||| |||| Sbjct 6142 GGATCGTCGCAAGACGCACTAGAGCGAAAGCATTTGCCAAGTATGTCTTAATTGATCA-A 6084 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 6083 GAACGAAAGTTAGAGG 6068 >seq1772 Length=26971 Score = 127 bits (140), Expect = 4e-27 Identities = 185/256 (72%), Gaps = 14/256 (5%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC------CTTTGCTCGAATACAT 124 ||||| |||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 12636 ACTTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTGAAATATCTGCCTGAATAGTG 12577 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--CCGCC 182 ||||||||| ||| || ||||| | |||||||||||||||||||| ||||| | Sbjct 12576 GTGCATGGAATGATACAACAGGACCT-CGGTTCTATTTTGTTGGTTT-TAGGAATATGAG 12519 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||||||| ||| ||| | |||||| | ||||| || ||||||| ||||| Sbjct 12518 GTAATGATCAATGTGGACTGGCGGGGGCATTCGTATTGCGACGTTAGAGGTG---TTCTT 12462 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| |||| |||||||| || ||||| |||| || | | |||| Sbjct 12461 GGATCGTCGCAAGACGCACTAGAGCGAAAGCATTTGCCAAGTATGTCTTAAATGATCA-A 12403 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 12402 GAACGAAAGTTAGAGG 12387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915048653376