Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3566 228 1e-57 seq3051 224 2e-56 seq1772 136 6e-30 seq64 114 2e-23 >seq3566 Length=7760 Score = 228 bits (252), Expect = 1e-57 Identities = 213/268 (79%), Gaps = 12/268 (4%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || ||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5553 TACACGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 5612 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-- 118 |||||||||||| |||| || | ||||| ||||| |||||| ||||||| Sbjct 5613 ACCTGTTATTGC-TCAATCT-CGTGCGGCTGTAAGCCGCCTGTCCCTTTAAGAAGAATAA 5670 Query 119 -----GCC---ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 ||| | || ||| | | ||| ||| ||| || |||||||||||| Sbjct 5671 GTGTCGCCGGTAGCATTGATACCGGTATCGTCTAGTTAATAGGCTAGAGTCTCGTTCGTT 5730 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5731 ATCGGAATTAACCAGACAAATCGATCCACCAACTAAGAACGGCCATGCACCACTACCCAC 5790 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| Sbjct 5791 TGAATCAAGAAAGAGCTATCAATCTGTC 5818 >seq3051 Length=10318 Score = 224 bits (248), Expect = 2e-56 Identities = 203/253 (80%), Gaps = 12/253 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 9366 TCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 9424 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-------GCC---ACCA 125 || || | ||||| ||||| |||||| ||||||| ||| | || Sbjct 9425 AATCT-CGTGCGGCTGTAAGCCGCCTGTCCCTTTAAGAAGAATAAGTGTCGCCGGTAGCA 9483 Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | | ||| ||| ||| || ||||||||||||||||||||||||||| Sbjct 9484 TTGATACCGGTATCGTCTAGTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAG 9543 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 9544 ACAAATCGATCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAG 9603 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 9604 CTATCAATCTGTC 9616 >seq1772 Length=26971 Score = 136 bits (150), Expect = 6e-30 Identities = 158/212 (75%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || ||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 12095 TACACGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 12154 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG----- 115 ||||||||||| ||||| | || ||||| ||||| |||||| ||||||| Sbjct 12155 ACCTGTTATTG-CTCAATC-TCGTGCGGCTGTAAGCCGCCTGTCCCTTTAAGAAGAATAA 12212 Query 116 -----CCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTT 170 | | | || ||| | | ||| ||| ||| || |||||||||||| Sbjct 12213 GTGTCGCCGGTAGCATTGATACCGGTATCGTCTAGTTAATAGGCTAGAGTCTCGTTCGTT 12272 Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||||||||||||||||||| ||||| || Sbjct 12273 ATCGGAATTAACCAGACAAATCGATCCACAAA 12304 >seq64 Length=2032477 Score = 114 bits (126), Expect = 2e-23 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||| Sbjct 778029 GTCTTGTTCGTTATCGGAATTTACCAGACAAATCGATCCACCAACTAAGAAAGGCCATGC 778088 Query 219 ACCACCACCCATAGAATCAAGAAAGA 244 ||||| ||||| ||||| ||||||| Sbjct 778089 ACCACTACCCAATGAATCTAGAAAGA 778114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796672350897