Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33 127 2e-24 >seq33 Length=2490231 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| ||||||| ||| ||||| ||||| |||||||| || || || || || || ||| Sbjct 181503 GAAAAACATTTTATTTCTCATGTATTGGCTTTCTTTGCTGCCTCTGATGGAATTGTTAAT 181562 Query 61246 GAGAATTTATTGGA-ACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 || || ||| | || | |||| | || || || ||||| | || || | ||||| || Sbjct 181563 GAAAACTTAGTTGAGAGGTTTAGT-CAAGAAGTTCAAGTAACTGAAGCAAGATGTTTTTA 181621 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 ||| ||||| ||||| ||||| ||||| ||||| |||||||||||| | ||||| ||||| Sbjct 181622 CGGTTTCCAAATTGCAATGGAAAATGTTCACTCTGAGATGTACAGTTTACTCATAGATAC 181681 Query 61365 GTACATCAGGGA 61376 || || |||| Sbjct 181682 TTATATTCGGGA 181693 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 61426 GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGT 61485 |||||| ||||| || ||||| || | |||||| || || || || || |||| Sbjct 182458 GTGAAGAAAAAAGCTGACTGGGCTTTGGAATGGATCTCCTCTAAGACTGCCACTTTTGCA 182517 Query 61486 GAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCA 61545 ||| || | | || ||||| | || || || ||||||||| ||| ||||| || Sbjct 182518 GAAAGAATTATTGCTTTTGCTGCTGTGGAAGGCGTATTTTTCTCTGGTAGCTTTGCGGCT 182577 Query 61546 ATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATA 61605 || |||||||| |||||| | ||| | ||||| || || || ||||||||||| ||||| Sbjct 182578 ATATTTTGGTTAAAGAAAAGAGGATTAATGCCAGGGCTTACTTTCAGCAATGAATTGATT 182637 Query 61606 TC 61607 || Sbjct 182638 TC 182639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397487872281680