Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodnius_20prolixus_20[genbank_20GCA_5F000181055.3_202015-04-08] 16,537 sequences; 706,824,083 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq34 140 1e-28 >seq34 Length=2470766 Score = 140 bits (154), Expect = 1e-28 Identities = 258/376 (69%), Gaps = 8/376 (2%) Strand=Plus/Minus Query 2520 ATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATC 2579 ||||||||| | |||| ||||||| ||| ||| |||| | || |||||||| | Sbjct 1143684 ATACCCAATAGTTTCTATAGAAGATGCGATGAGTGAAGACGATTATGAAGGTTGGAAGTT 1143625 Query 2580 TCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAA 2639 ||||||| | | || || || ||||||||||||| || || || ||||| || || Sbjct 1143624 ACTTACTGCAAAATTGGGGAGTGAAATTCAATTGGTTGGAGATGATTTGTTCGTTACAAA 1143565 Query 2640 CACTG--CT--TACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCA 2695 || || ||| | || || || | ||| | || || | | || |||| Sbjct 1143564 TTGTGAACTAATACGTAGA----GGAATAGAGGAAGGAGTGGCAAATGCTGTACTAATCA 1143509 Query 2696 AAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAG 2755 || || || || || || || || ||||||||| ||||| | |||||| ||| || Sbjct 1143508 AACCGAATCAGATAGGAACATTAACAGAAACTTTTACTGCTATTGGAATGGCAAAATCAG 1143449 Query 2756 CTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTG 2815 | | |||| | | || |||||||||||||||||||||| ||||| |||| || || Sbjct 1143448 GTCGTTACAAAACTGTTCTATCACACCGTTCAGGTGAAACAGAAGACACAACGATATCTC 1143389 Query 2816 ATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACC 2875 |||| ||| |||| | || ||| ||||| ||||| || ||| | |||||| |||| Sbjct 1143388 ATATAGCAATTGCGTCAAATTGTGGGCAAATAAAGACTGGCTCACTATCACGTTCTGATA 1143329 Query 2876 GTATTGCTAAATACAA 2891 | |||| || || || Sbjct 1143328 GGCTTGCAAAGTATAA 1143313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156007757666628