Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq228584 93.3 8e-17 seq133293 75.2 2e-11 >seq228584 Length=1115 Score = 93.3 bits (102), Expect = 8e-17 Identities = 172/242 (71%), Gaps = 13/242 (5%) Strand=Plus/Minus Query 86 AAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTAG-CATGGAATAATAGA 141 ||||||||||| | ||||||||| ||| ||||| || ||||||||||| | Sbjct 327 AAATTAGAGTGCTTAAAGCAGGCTCCAAATGCCAGAATATTTTGTACATGGAATAATGAA 268 Query 142 ATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGA 199 |||| || || | ||||| ||| || |||||||| | | | ||||||||| || Sbjct 267 ATAGCACCTGTG-TTCTACTTTCATTAGTTTCTAGATCAAGAGGCAATGATTAACAGAAG 209 Query 200 TAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA--TTTATTGAAGA 256 ||| |||||| | ||||| | ||||||||||||||||||| | || || Sbjct 208 CAGTTTGGGGGTATTTGTATTGTGACGCCAGAGGTGAAATTCTTGGACCGTCGTT--CGA 151 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGG 316 |||||| |||||||| || |||| ||||| |||||| |||| ||| |||||| || Sbjct 150 CTAACTTAAGCGAAAGCATTTGCCAAAGATGTGTTCATTTATCA-AGAATGAAAGTAAGA 92 Query 317 GG 318 || Sbjct 91 GG 90 >seq133293 Length=2091 Score = 75.2 bits (82), Expect = 2e-11 Identities = 147/209 (70%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAG 175 ||||| || ||||||||||| | || ||| | | |||||| ||| ||||||||||| Sbjct 1314 GAATATTTTTTCATGGAATAATGAAGTAAGACCT-CTGTTCTACTTTCATTGGTTTCTAG 1372 Query 176 GACC-GCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 | | |||||||| ||||| || | | ||| || ||||| | | ||| || Sbjct 1373 ATCAAGAGGTAATGATAAATAGAAGCAGCTTGAGGGCGTTAGTATGACAACGCGAGATGT 1432 Query 234 GAAATTCTTGGATTTATTGAAGACT----AACTACTGCGAAAGCGTTCACCAAGGATGTT 289 ||||||| ||||| | ||| | ||||| |||||| | || |||| |||||| Sbjct 1433 AAAATTCTCGGATTG-TCGAAATCATTTGAACTATAGCGAAAACATTTGCCAAAGATGTT 1491 Query 290 TTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||| |||||||| |||| || Sbjct 1492 TTCATTGATCA-AGAACGAAATTTAGAGG 1519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912569486400