Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq225788 114 5e-23 seq59646 93.3 2e-16 seq170994 91.5 6e-16 seq262296 75.2 5e-11 >seq225788 Length=1140 Score = 114 bits (126), Expect = 5e-23 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 527 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 468 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 467 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 408 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||||||| || | |||||| || Sbjct 407 AGAGAGTTAAATAGTAAGTGAAACTG 382 >seq59646 Length=1394 Score = 93.3 bits (102), Expect = 2e-16 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 69 AATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 |||||| || ||| ||| |||||| |||||||| | ||||||||||| ||||||| Sbjct 1179 AATGGGTGGCAAACTTCATCTAAAACTAAATATAACCATGAGACCGATAGTAAACAAGTA 1238 Query 129 GAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| ||||| ||||||| |||||| | ||||| |||||| | ||| |||| Sbjct 1239 CCGTGAGGGAAAGTTGAAAAGAACTTTGAATAGAGACTTAAAATGTACGCGAAA 1292 >seq170994 Length=1646 Score = 91.5 bits (100), Expect = 6e-16 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| ||| || |||| ||| | |||| | | |||||| |||||| Sbjct 1090 GAGTCGTGTTGCTTGTTCGTGCTGCACTAAGGGGGTGCTAAACTCCATCTAAAACTAAAT 1031 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| |||||| |||| ||||| ||||||| ||| || | Sbjct 1030 ATAACCATGAGACCGATAGTAAACAAGTTCCGTGAGGGAAAGTTGAAAAGAACTGTGAAT 971 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || | |||||| Sbjct 970 AGAGAGTTAAATAGTAAGTGAAA 948 >seq262296 Length=1011 Score = 75.2 bits (82), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || || |||||||||| || ||||| | ||| | | ||||| ||| |||| | ||| || Sbjct 47 TGCGATCCGAAAGATGCTGTACTATACTTGATCAAGTTGAAGTCAGGGGAACC-CTGATG 105 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | | || | | |||||| | ||||||||||| |||| | ||| |||||||||| Sbjct 106 AAAGGCCGAAACAGTTCTGACCTGCAAATCGATTGTCAGA-TTGAGTATAGGGGC 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073834733750