Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq38675 136 7e-30 seq44815 113 8e-23 seq27052 100 5e-19 >seq38675 Length=1805 Score = 136 bits (150), Expect = 7e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 841 TGCTTCACAATGATAGGAAGAGCTGACATCGAAGGATCAAAAAGCGACGTCGCTATGAAC 900 Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||| |||||||||||||||||||||| Sbjct 901 GCTTGGCCGCCACAAGCCAGTTATCCCTGT 930 >seq44815 Length=1394 Score = 113 bits (124), Expect = 8e-23 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 789 GTCATTAGCAGGGCAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 730 Query 90 ATTAGTGGGTGAACAATCCAACGC 113 | ||||||||||||||||||| Sbjct 729 -TGCATGGGTGAACAATCCAACGC 707 >seq27052 Length=2666 Score = 100 bits (110), Expect = 5e-19 Identities = 81/97 (84%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 73 CCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGG 132 ||| ||||||||||||| | ||||| ||||| ||||| ||| ||||| || ||| Sbjct 1411 CCCTGCTCACGTTCCCTTGCA-TGGGTCAACAAGCCAACACTTGGTGAATTTTGATTCAC 1469 Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 |||||||||||||||||||||||||||||||||||| Sbjct 1470 AATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 1506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851944240800