Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq200556 78.8 6e-13 seq95904 78.8 6e-13 seq90298 78.8 6e-13 seq104248 73.4 2e-11 >seq200556 Length=1340 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1110 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1053 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 1052 TAAT-CAATGCGAG 1040 >seq95904 Length=2864 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1477 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1534 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 1535 TAAT-CAATGCGAG 1547 >seq90298 Length=1849 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1197 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1140 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 1139 TAAT-CAATGCGAG 1127 >seq104248 Length=1347 Score = 73.4 bits (80), Expect = 2e-11 Identities = 56/64 (88%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||| || Sbjct 563 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGTCG 506 Query 109 TAAT 112 |||| Sbjct 505 TAAT 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299989461500