Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq200556 78.8 2e-12 seq90298 77.0 6e-12 >seq200556 Length=1340 Score = 78.8 bits (86), Expect = 2e-12 Identities = 101/138 (73%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| ||||| |||||| | | || | || || |||| ||||| | | | || Sbjct 933 CCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTG 992 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || | || | | | ||| ||||| || |||||| | | ||||| | | ||| |||||| Sbjct 993 AAACTGTT-CACATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATT 1051 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1052 ACGTCCCTGCCCTTTGTA 1069 >seq90298 Length=1849 Score = 77.0 bits (84), Expect = 6e-12 Identities = 94/127 (74%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 ||||| |||||| | | || | || || |||| ||||| | | | || || | || | Sbjct 1031 AGGTCCGGGTAAACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CA 1089 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 | | ||| ||||| || |||||| | | ||||| | | ||| ||||||||||||||||| Sbjct 1090 CATGAACTTGGAATTCCCAGTAAGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCC 1149 Query 322 CTTTGTA 328 ||||||| Sbjct 1150 CTTTGTA 1156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944477510400