Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq43197 289 9e-76 seq24299 111 5e-22 seq188069 109 2e-21 seq92520 93.3 1e-16 seq21522 84.2 7e-14 seq16927 84.2 7e-14 seq202130 80.6 9e-13 seq111800 77.0 1e-11 seq86709 77.0 1e-11 >seq43197 Length=1003 Score = 289 bits (320), Expect = 9e-76 Identities = 169/175 (97%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 382 AGTAGATAGGGACAGTAGGAATCTCGGTAATCCACTCATGCGCGTCACTAATTAGATGAC 323 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 322 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTT 263 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 262 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 208 Score = 114 bits (126), Expect = 4e-23 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCT-CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 || |||||||||| | ||||||||||||||||||||||||||| ||||||| ||| || Sbjct 900 GATTAGAGTCAAGATTCAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCTGTTTCC 841 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||||||| |||||||| Sbjct 840 TTGGCTGTGGTTTCGCTAGCTAGTAGAT 813 >seq24299 Length=1641 Score = 111 bits (122), Expect = 5e-22 Identities = 206/310 (66%), Gaps = 57/310 (18%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||||||||||| | || ||| | | ||| | || ||||||||||||||| Sbjct 284 CTTCCACTTATTCTACAACCCTTAAGCCTCCTTACACTGCTAGATTAGAGTCAAGCTCAA 343 Query 297 CAGGGTCT-TCTTTCCCCGCTGAT-----TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 || | | ||| |||||| | || | | ||| ||||||| |||| || |||||| Sbjct 344 CAATCTATCTCTGTCCCCGGTAATGATTATTCTCCA--CCCGTTCACTTGACTTTGGTTT 401 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 | |||| ||||||| ||||||| |||| ||||||||| || || || || Sbjct 402 C-----------GATAAGGACAGTATGAATCTCATTAAGCCATTCATGTGCTTCGCTTAT 450 Query 411 -TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||||||||||||||||| ||| Sbjct 451 ACAGATGACGAGGCATTTGGCTAC-------------------------------ACC-- 477 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 | ||||||| ||| |||||| |||||| |||||||||||||||| |||||| ||| Sbjct 478 ----TACTTGAATTCCTTTACTTTGGCATTCAAAGCACTGGGCAGAAATTACATTGTGTC 533 Query 530 AACATCACTT 539 |||| || || Sbjct 534 AACACCAGTT 543 >seq188069 Length=1258 Score = 109 bits (120), Expect = 2e-21 Identities = 202/304 (66%), Gaps = 57/304 (19%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||||||||||| | || ||| | | ||| | || ||||||||||||||| Sbjct 692 CTTCCACTTATTCTACAACCCTTAAGCCTCCTTACACTGCTAGATTAGAGTCAAGCTCAA 633 Query 297 CAGGGTCT-TCTTTCCCCGCTGAT-----TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 || | | ||| |||||| | || | | ||| ||||||| |||| || |||||| Sbjct 632 CAATCTATCTCTGTCCCCGGTAATGATTATTCTCCA--CCCGTTCACTTGACTTTGGTTT 575 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 | |||| ||||||| ||||||| |||| ||||||||| || || || || Sbjct 574 C-----------GATAAGGACAGTATGAATCTCATTAAGCCATTCATGTGCTTCGCTTAT 526 Query 411 -TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||||||||||||||||| ||| Sbjct 525 ACAGATGACGAGGCATTTGGCTAC-------------------------------ACC-- 499 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 | ||||||| ||| |||||| |||||| |||||||||||||||| |||||| ||| Sbjct 498 ----TACTTGAATTCCTTTACTTTGGCATTCAAAGCACTGGGCAGAAATTACATTGTGTC 443 Query 530 AACA 533 |||| Sbjct 442 AACA 439 >seq92520 Length=1971 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||| ||||||||||||| || ||||| ||| ||||||||||| |||||||| Sbjct 1211 AGTCAAGTTCAACAGGGTCTTTATTTCCCGCCAATTATTCCAAGCCCGTTTTCTTGGCTG 1270 Query 345 TGGTTTCGCTAGATAGTAGATAGG 368 |||||||| ||||||||||| ||| Sbjct 1271 TGGTTTCGATAGATAGTAGAAAGG 1294 >seq21522 Length=2311 Score = 84.2 bits (92), Expect = 7e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2199 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 2244 >seq16927 Length=1365 Score = 84.2 bits (92), Expect = 7e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||| ||| ||| | |||||| ||||| | |||| | | |||||||||||||||| Sbjct 906 AGTAGAAAGGAACATTAGGAATCACGTTATATAAATCATTCTCATCACTAATTAGATGAC 847 Query 419 GAGGCATTTGGCTACCTTA 437 ||||||||||||||||||| Sbjct 846 GAGGCATTTGGCTACCTTA 828 >seq202130 Length=1864 Score = 80.6 bits (88), Expect = 9e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || || |||||||| | || || |||||||||||| |||||||||||||||||||| Sbjct 931 AGAGTATTCTTTCCACTCTACTTATTACAAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGA 990 Query 358 TAGTAGATAGGG 369 |||||||||||| Sbjct 991 TAGTAGATAGGG 1002 >seq111800 Length=3218 Score = 77.0 bits (84), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCAC--TTTGACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||| ||||| |||||||| ||| |||| | |||||||||| |||| Sbjct 2382 CGTTTACCCGCGCTTTCTTGAA-TTCTTCACTTTTTTACATACGGAGCACTGGGTAGAAT 2440 Query 518 TCACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 2441 TCACATTATGTCAACA 2456 >seq86709 Length=1780 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 ||||||||||||||||||| |||| ||||| || ||||| ||||||||| |||||| Sbjct 1171 GTCAAGCTCAACAGGGTCTGCTTTTTCCGCTAATCATTCCAAGGCCGTTCCCTGGGCTGT 1112 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAAT 380 | ||| ||| ||| || || ||| | || | ||| Sbjct 1111 GATTTTGCTTAATACTAAATTGGGGCTGTAGAAAT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630500026400