Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophagidae_20sp._20BV-2014_20[genbank_20GCA_5F001047195.1_202015- 07-06] 287,425 sequences; 494,580,772 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq282627 201 9e-47 >seq282627 Length=1296 Score = 201 bits (222), Expect = 9e-47 Identities = 388/569 (68%), Gaps = 4/569 (1%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||| |||||||| || ||||| ||||| ||||| |||||||| | ||||||||||| Sbjct 1263 TTCGCCCCATACATCATGCAGACCAGGACATTTGTGGGGACACATTAAAGACCAATCACC 1204 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCG 66381 || | || || | |||||||||||| |||||||| || |||||||| ||||| | Sbjct 1203 ATTTTCCTCAACTCTTTTCATAAATAGATCTGGTATCCATAGAGCGTAGAAAAGATCTCT 1144 Query 66382 TGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || || | || || |||| |||||| ||||| | || ||||| || || | Sbjct 1143 AGCGCGATTTTCTTCCTTGCCAGTATTTTTCTTTAAGTCTAAAAATTCAAAAATATCCGA 1084 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 |||||| || |||| |||| ||| || | || |||||| || ||||| |||||||| Sbjct 1083 ATGCCAAGGCTCCAAATAGACGGCAAAAGCACCAGGACGTTTACCACCACCCTGGTCGAC 1024 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 || | || ||||| ||||| || | |||||| || || | || || || ||||||| Sbjct 1023 ATATCTGGCCACATTATTGAACACTCTCAACATGGGCACCAAACCATTCGAAGTGCCATT 964 Query 66562 GGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACC 66621 ||||| || || | | ||| || |||||| |||||||| | |||||||| || Sbjct 963 AGTGCCATCAATAGAAGTGCCTTTGGCGCGTATACAATGAACATTGATGCCAATACCGCC 904 Query 66622 GGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 ||| | || || || |||||| | | || | ||| || || || || || || Sbjct 903 GGCTGATTTGGAAATCATAGCACATTGTTCGACAGATTTGAAAATACCCTCTATAGAATC 844 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 | | || || | |||| | || || ||||||||| || ||||| || | || Sbjct 843 AGCTACCATAGTTAAGAGGAAACAAGATGATAGTTGGGGTCTGTTGGTGGCCGCGGCAAA 784 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTA--ATGGCGAGACATGTAATTGTACGTCTCGATG 66799 | || || | ||| || ||||| || | ||| | || |||| || ||||| ||| Sbjct 783 CAAAGTTGGCGAAGCATGTGTAAAATATCTTTCCGATA-AT-AAATTATATGTCTCTATG 726 Query 66800 ACAGCATCAATGTTTTCGCCATGAATCCC 66828 | | ||| || | || ||||| || || Sbjct 725 GCTGAATCTATATCCTCACCATGTATACC 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396175322402000