Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq193 102 2e-19 seq11380 77.0 6e-12 >seq193 Length=478 Score = 102 bits (112), Expect = 2e-19 Identities = 184/260 (71%), Gaps = 17/260 (7%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| |||| ||||| | ||| ||||| Sbjct 255 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGCGCTTACAATCCGTCAGAGCC 197 Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCAC-CAG 119 | | ||||| ||||||||||||| | ||||||||| ||||| || || ||| | Sbjct 196 TCCTTGTGGGGTGATGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTCAG-CGGCACGTCG 138 Query 120 CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAAC-AGGGCGACG 178 ||||||||| | | || | |||||| || |||||||| |||| || | | Sbjct 137 CGAGGTTAA-CCCGTGTGG---GGTAGCCGTAGCGAAAGCGAATACTAACTAGTGTG--- 85 Query 179 AGTTG-GTGGCG----CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC 233 |||| |||||| || ||| |||| | |||||||||||| | ||| ||||| Sbjct 84 -GTTGAGTGGCGTGTCCTGGACCCGAAGCGGGGTGATCTACCCATGGCCAGTGTGAAGCG 26 Query 234 GCGGTAACGCGTGATGGAGG 253 ||||| ||| |||||| Sbjct 25 ATGGTAAGACGTCGTGGAGG 6 >seq11380 Length=2504 Score = 77.0 bits (84), Expect = 6e-12 Identities = 102/142 (72%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252 ||| |||| | |||||||||||| | ||| ||||| ||||| ||| ||||| Sbjct 2502 GACCCGAAGCGGGGTGATCTACCCATGGCCAGTGTGAAGCGATGGTAAGACGTCGTGGAG 2443 Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312 | |||||| | |||||||| | |||||| | ||||||||||||||||||| Sbjct 2442 GCGCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCA 2383 Query 313 ATCAAACTGGGAAATAGCTCGT 334 |||||||| | |||||| || Sbjct 2382 ATCAAACTCCGTGATAGCTGGT 2361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972616529920