Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq17048 174 2e-41 seq13748 172 8e-41 >seq17048 Length=654 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 374 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 317 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 316 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 257 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 256 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 197 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 196 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 144 >seq13748 Length=1948 Score = 172 bits (190), Expect = 8e-41 Identities = 173/220 (79%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| | |||| ||||||| | ||||||| |||||| | Sbjct 364 GTACAAAGGGCAGGGACGTAATCAACACAAGCT-GATGACTTGTGCTTACTGGGAATT-C 421 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||| |||| |||| | ||||| ||||||| || ||||| | || Sbjct 422 CTCGTTCATGGACAATAATTACAATCCCCAATCCCAATCACGAAAAAGTTTCACTGGGTT 481 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA--CTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||| ||| |||| |||| | | | | || ||| ||||||||||||||||| Sbjct 482 GCCCGCTCCTTTCGGAGTAGGTAACATATGCACGCTGATCTTTTCAGTGTAGCGCGCGTG 541 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||| | ||||||||||||||||||||||||||||||| Sbjct 542 CGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751862604900