Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq13467 104 1e-20 seq13748 77.0 2e-12 >seq13467 Length=1280 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 78 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 137 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 138 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 194 >seq13748 Length=1948 Score = 77.0 bits (84), Expect = 2e-12 Identities = 89/118 (75%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||| ||| |||||| |||| || ||| ||| ||||||| ||| || || | | Sbjct 821 GAACCGAAAAACTTTGGTTTCCCGGAAGCCGCCAGCCGAGTCATAAACGA--ACTCTGGC 878 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 879 TGATTGCTAGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278350775400