Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq13748 176 8e-42 seq13467 174 3e-41 >seq13748 Length=1948 Score = 176 bits (194), Expect = 8e-42 Identities = 192/249 (77%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| ||||||||||| | | || |||||| | |||| Sbjct 1183 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCATCATCGCCTGAATACTGTTGCAT 1124 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGA 189 |||||||||||||||||| | |||||| || ||||||| | | ||| ||| ||||||| Sbjct 1123 GGAATAATAGAATAGGACCTT-GGTTCTGTTCTGTTGGTCT-TCGGATCCGAGGTAATGA 1066 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| | ||||| | |||| | | |||||||||||||||||| Sbjct 1065 TTAAGAGGGACGGACGGGGACATTAGTACTGCGGCGATAGAGGTGAAATTCTTGGACCGC 1006 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||||| | |||||||| || |||| | |||||||||||||| ||||||| Sbjct 1005 CGCATGACTAACCAAAGCGAAAGCATTTGTCAAGAACGTTTTCATTAATCA-AGAACGAA 947 Query 310 AGTTAGGGG 318 |||||| || Sbjct 946 AGTTAGAGG 938 >seq13467 Length=1280 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 477 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 418 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 417 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 359 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 358 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 299 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 298 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 239 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 238 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915027393280