Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq16788 149 3e-33 seq16439 147 9e-33 seq17614 122 4e-25 seq16880 118 4e-24 >seq16788 Length=1578 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 258 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 317 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 318 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 377 >seq16439 Length=2923 Score = 147 bits (162), Expect = 9e-33 Identities = 207/284 (73%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAA-- 465 ||||||||| |||||||||||||||| ||| ||| || |||||| | ||| | || Sbjct 62 CCCGTCTTGAAACACGGACCAAGGAGCCTACCATATACGCGAGTCGCTCGGTCTTGAATA 121 Query 466 --CCCGTGCG-CGTAATGAAAGTGA-ACGGAGGTGGGA-ACCCGTGAGGGTGCACCATCG 520 || | | | |||||||||||| | || || | || | | || || ||| Sbjct 122 GGCCTGGGAGGCGTAATGAAAGTAACACTAAGCTACGACAGCAATGGCAGTAGTGGCTCG 181 Query 521 ACCGATCCTGATGTCTTCG-GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 ||| | | | | | || | ||||| || |||| || || ||| ||||||||| Sbjct 182 CCCGCTTC-GTTTTTTTGGCGATGGGGCGAAGCTGGAGCGTATATGGTGGTACCCGAAAG 240 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| | | |||||||||||||||||||||||||| | |||| Sbjct 241 ATGGTGAACTATGCCTGGGCAAGACGAAGCCAGAGGAAACTCTGGTGGAGGTCTGTAGCG 300 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| |||||||||||||||||| | ||||||||||||||| Sbjct 301 ATTCTGACGTGCAAATCGATCGTCAGACCTGGGTATAGGGGCGA 344 >seq17614 Length=597 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 340 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 399 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 400 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 459 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 460 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 499 >seq16880 Length=1354 Score = 118 bits (130), Expect = 4e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||| || ||||||| || | || |||||| | | || || |||||| Sbjct 397 GAGTCAGGTTGCTTGAGAGTGCAGCTTAAAGTCGGTGGTAAACTCCATCCAAGACTAAAT 338 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||| |||||||||||| ||||||| |||| ||||| |||||||||||||| | Sbjct 337 ATTGCAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTTTGAAG 278 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || ||||||||||| Sbjct 277 AGAGAGTTCAATAGCACGTGAAA 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079595453000