Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10] 18,860 sequences; 56,262,437 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq11380 381 8e-104 >seq11380 Length=2504 Score = 381 bits (422), Expect = 8e-104 Identities = 231/243 (95%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1218 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 1277 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 1337 Query 121 ACAC--GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | || ||| ||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1338 AAACCAGTCTGTCACCAGCAGTGGTCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCG 1397 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1398 AGTTCCTTAACCACAGTTCACCCGATCGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 1457 Query 239 GTT 241 ||| Sbjct 1458 GTT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694273128780