Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcoptes_20scabiei_20[genbank_20GCA_5F000828355.1_202015-02-10]
18,860 sequences; 56,262,437 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq17048 199 6e-49
seq13748 194 3e-47
>seq17048
Length=654
Score = 199 bits (220), Expect = 6e-49
Identities = 178/218 (82%), Gaps = 9/218 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 216 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 158
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 157 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 99
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 98 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 39
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
||||| ||||||||||||||||||||||||||||||||
Sbjct 38 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCA 1
>seq13748
Length=1948
Score = 194 bits (214), Expect = 3e-47
Identities = 178/220 (81%), Gaps = 15/220 (7%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 525 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 583
Query 76 AAACTTCCATT-GGCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCCACC--------A 125
|| ||| ||||| || ||| | ||||||||||||||| | | |
Sbjct 584 TT--TTTCATACGGCTGAAACGCCGTTTGTCCCTCTAAGAAGCTTGGATCGGAAGTCGAA 641
Query 126 ACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
|| | |||| | |||||||| ||| || |||||||||||||||||||||||||||
Sbjct 642 ACGAATTCCGATTG--CTATTTAGTAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAG 699
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
||||||| ||||||||||||||||||||||||||||||||
Sbjct 700 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCA 739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796654419660
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |